Generate gene coexpression network for RNA-Seq data.
Welcome! This is repository for gene coexpression network script. This R script was used in the published project: Lignin-based resistance to Cuscuta campestris parasitism in Heinz resistant tomato cultivars
The input file should be a CSV file with normalized RNA-Seq expression data or read counts with gene names by row and experiment samples by column.
Please see the sample data CSV file t_only_all_4.csv for examples of formatting.
counts=read.csv ("t_only_all_4.csv", row.names=1)
Please replace "t_only_all_4.csv" with the RNA-Seq expression data that you are using.
- Package Author: Hokuto Nakayama
Feel free to contact Hokuto if you have any questions about the script.
- README.md Author: Min-Yao Jhu