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Init files #58

Merged
merged 105 commits into from
Jul 17, 2023
Merged

Init files #58

merged 105 commits into from
Jul 17, 2023

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shauntruelove
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shauntruelove and others added 30 commits May 4, 2023 13:36
@shauntruelove
adding functionality to add additional seeding on resumes
cd0a2b0
@shauntruelove
fix seeding
991a3fd
@shauntruelove
fix seeding
de2d64c
@shauntruelove
Merge branch 'seeding_fix' of https://github.com/HopkinsIDD/flepiMoP …
5ad4c54 
…into seeding_fix

# Conflicts:
#	flepimop/main_scripts/create_seeding_added.R
@shauntruelove
fixed dumb seeding error
ed80f86
@shauntruelove
fixing seeding
b9ebfa5
@shauntruelove
new seeding builder
b8ab6b1
@jcblemai
more resilient to differnt shell (zsh, bash)
7490b0b
@jcblemai
local flag to print all the variables to reproduce failed runs
2ee20b1
@shauntruelove
fix seeding
8cae554
@saraloo
fix typo in model output directory and limit hosp file
5261542
@saraloo
Merge branch 'seeding_fix' of https://github.com/HopkinsIDD/flepiMoP …
06c5937 
…into seeding_fix
@shauntruelove
add options in config to fix either resumed seeding or added seeding
8b3a2ac
@shauntruelove
Merge branch 'seeding_fix' of https://github.com/HopkinsIDD/flepiMoP …
f652db1 
…into seeding_fix
@saraloo
fix parentheses typo added seeding
9bd4a56
@shauntruelove
fix seeding in config writer
b57ccc8
@shauntruelove
Merge branch 'seeding_fix' of https://github.com/HopkinsIDD/flepiMoP …
2659f18 
…into seeding_fix
@jcblemai
continatation envar
c9d427e
@jcblemai
continuation default to resume
db7d8ac
@jcblemai
downloading continuation resume files
7964f48
@jcblemai
skip initial spaces for hand made csv
91293a1
@jcblemai
fix
96d2a22
@jcblemai
single files for initial conditions and seeding
f4bd654
@jcblemai
black
7aabf78
@jcblemai
fix
ace9ff4
@jcblemai
removed deprecated files that use to print the results
fec65b6
@shauntruelove
fix seeding issue if not using seeding
f4e9bd6
@shauntruelove
fix seeding requirements in building data
6cfa8de
@shauntruelove
fix another seeding issue
19c1c25
@jcblemai
remove duplicate section
e821873
jcblemai and others added 22 commits June 7, 2023 11:38
@jcblemai
fix post-processing scripts
3559e98
@jcblemai
Merge branch 'init_files' of https://github.com/HopkinsIDD/flepiMoP i…
1a3fbe2 
…nto init_files
@jcblemai
made postprocessing call explicit so it can be redone from logs
7777de6
@jcblemai
send postprocessing plots to s3 and fs_results path
9b5c1c6
@saraloo
add top and bottom 5 llik plots and cumulatives to snapshot
696781b
@shauntruelove
add preOm no delta init
2594444
@shauntruelove
Merge branch 'init_files' of https://github.com/HopkinsIDD/flepiMoP i…
d48d42c 
…nto init_files
@jcblemai
cleaned for sara
61d5c16
@jcblemai
merge
256b6b5
@jcblemai
remove dependency
8b8af8f
@saraloo
make snpi plots bigger in snapshot
f60a5dd
@saraloo
Merge branch 'init_files' of https://github.com/HopkinsIDD/flepiMoP i…
babaf3c 
…nto init_files
@jcblemai
TO CHECK: does not perturb the first iteration as to not loose good r…
3c8e999 
…un on seeding
@jcblemai
merge
624e8db
@jcblemai
fix post-processing uploaded
b97516d
@saraloo
add back hpar to snapshot
174e6b4
@saraloo
Merge branch 'init_files' of https://github.com/HopkinsIDD/flepiMoP i…
0c9477c 
…nto init_files
@jcblemai
removed the init file script
45ea23f
@shauntruelove
comment out extra data pull
51b18d5
@shauntruelove
Merge branch 'init_files' of https://github.com/HopkinsIDD/flepiMoP i…
6d9e18b 
…nto init_files
@saraloo
fix config.writer::seir_chunk glue::collapse back to paste
8c3ba6b
@jcblemai
better functions for debug
a528c5c
@shauntruelove shauntruelove merged commit 1552575 into main-fixvarerr Jul 17, 2023
1 check failed
@jcblemai jcblemai deleted the init_files branch July 24, 2023 22:57
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Reviewers

@jcblemai jcblemai jcblemai approved these changes

@saraloo saraloo saraloo approved these changes

@csmith701 csmith701 Awaiting requested review from csmith701

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3 participants
@shauntruelove @jcblemai @saraloo