landmark-reg

Interactive tool for landmark-based spatial alignment of volumetric images

Retired project

This code base is now retired, it has served its purpose as a prototype and has been refactored and renamed to Voluba:

• the front-end has been rewritten from scratch using the Vue.js framework and Neuroglancer as a viewer component;

• the back-end has been extracted and is maintained in a separate repository.

A production deployment of Voluba is available at https://voluba.apps.hbp.eu/.

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Developement set-up

Prerequisites:

• Python version 3.4 or later;
• Nodejs and the yarn package manager.

First, set up a virtual environment for the back-end under venv/, and install the dependencies there:

python3 -m venv venv
. venv/bin/activate
python -m pip install -r requirements.txt

Once this is done, you can use yarn install to install the dependencies, yarn start to build the front-end, and start the backend in debug mode.

. venv/bin/activate
yarn install
yarn start

The app should be accessible on http://localhost:5000/ .

If you make changes to the front-end you may want to use yarn run test:watch to automatically run tests on every change, and yarn run build:watch to automatically re-build the JavaScript bundle that is served to the browser (frontend/bundle).

Tests

Unit-tests for the frontend

yarn run test

Unit-tests for the backend

TODO

End-to-end tests

TODO