SEDR: Unsupervised Spatial Embedded Deep Representation of Spatial Transcriptomics

Note:

This repository has been merged into https://github.com/JinmiaoChenLab/SEDR/

Please visit (https://github.com/JinmiaoChenLab/SEDR/) for more information and latest update.

More analysis and evaluation scripts could be found in https://github.com/JinmiaoChenLab/SEDR_analyses/

Citation:

This repository contains the source code for the paper:

[1] Huazhu Fu, Hang Xu, Kelvin Chong, Mengwei Li, Hong Kai Lee, Kok Siong Ang, Ao Chen, Ling Shao, Longqi Liu, and Jinmiao Chen, "Unsupervised Spatial Embedded Deep Representation of Spatial Transcriptomics", bioRxiv (2021). https://www.biorxiv.org/content/10.1101/2021.06.15.448542

BibTeX

@article{SEDR_2021,
	author = {Huazhu Fu, Hang Xu, Kelvin Chong, Mengwei Li, Hong Kai Lee, Kok Siong Ang, Ao Chen, Ling Shao, Longqi Liu, and Jinmiao Chen},
	title = {Unsupervised Spatial Embedded Deep Representation of Spatial Transcriptomics},
	year = {2021}, 
	journal = {bioRxiv},
	doi = {10.1101/2021.06.15.448542},
	URL = {https://www.biorxiv.org/content/10.1101/2021.06.15.448542},
}