adding namespace to include header guards

Makefile.in

@@ -184,8 +184,8 @@ am__DIST_COMMON = $(srcdir)/Makefile.in \
 	$(top_srcdir)/config/install-sh $(top_srcdir)/config/ltmain.sh \
 	$(top_srcdir)/config/make.inc.in $(top_srcdir)/config/missing \
 	config/compile config/config.guess config/config.rpath \
-	config/config.sub config/install-sh config/ltmain.sh \
-	config/missing
+	config/config.sub config/depcomp config/install-sh \
+	config/ltmain.sh config/missing
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 distdir = $(PACKAGE)-$(VERSION)
 top_distdir = $(distdir)

ibtk/include/ibtk/AppInitializer.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_AppInitializer
-#define included_AppInitializer
+#ifndef included_IBTK_AppInitializer
+#define included_IBTK_AppInitializer
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -264,4 +264,4 @@ class AppInitializer : public SAMRAI::tbox::DescribedClass
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_AppInitializer
+#endif //#ifndef included_IBTK_AppInitializer

ibtk/include/ibtk/BGaussSeidelPreconditioner.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_BGaussSeidelPreconditioner
-#define included_BGaussSeidelPreconditioner
+#ifndef included_IBTK_BGaussSeidelPreconditioner
+#define included_IBTK_BGaussSeidelPreconditioner
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -326,4 +326,4 @@ class BGaussSeidelPreconditioner : public LinearSolver
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_BGaussSeidelPreconditioner
+#endif //#ifndef included_IBTK_BGaussSeidelPreconditioner

ibtk/include/ibtk/BJacobiPreconditioner.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_BJacobiPreconditioner
-#define included_BJacobiPreconditioner
+#ifndef included_IBTK_BJacobiPreconditioner
+#define included_IBTK_BJacobiPreconditioner
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -270,4 +270,4 @@ class BJacobiPreconditioner : public LinearSolver
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_BJacobiPreconditioner
+#endif //#ifndef included_IBTK_BJacobiPreconditioner

ibtk/include/ibtk/CCLaplaceOperator.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CCLaplaceOperator
-#define included_CCLaplaceOperator
+#ifndef included_IBTK_CCLaplaceOperator
+#define included_IBTK_CCLaplaceOperator
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -177,4 +177,4 @@ class CCLaplaceOperator : public LaplaceOperator
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CCLaplaceOperator
+#endif //#ifndef included_IBTK_CCLaplaceOperator

ibtk/include/ibtk/CCPoissonBoxRelaxationFACOperator.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CCPoissonBoxRelaxationFACOperator
-#define included_CCPoissonBoxRelaxationFACOperator
+#ifndef included_IBTK_CCPoissonBoxRelaxationFACOperator
+#define included_IBTK_CCPoissonBoxRelaxationFACOperator
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -320,4 +320,4 @@ class CCPoissonBoxRelaxationFACOperator : public PoissonFACPreconditionerStrateg
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CCPoissonBoxRelaxationFACOperator
+#endif //#ifndef included_IBTK_CCPoissonBoxRelaxationFACOperator

ibtk/include/ibtk/CCPoissonHypreLevelSolver.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CCPoissonHypreLevelSolver
-#define included_CCPoissonHypreLevelSolver
+#ifndef included_IBTK_CCPoissonHypreLevelSolver
+#define included_IBTK_CCPoissonHypreLevelSolver
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -340,4 +340,4 @@ class CCPoissonHypreLevelSolver : public LinearSolver, public PoissonSolver
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CCPoissonHypreLevelSolver
+#endif //#ifndef included_IBTK_CCPoissonHypreLevelSolver

ibtk/include/ibtk/CCPoissonLevelRelaxationFACOperator.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CCPoissonLevelRelaxationFACOperator
-#define included_CCPoissonLevelRelaxationFACOperator
+#ifndef included_IBTK_CCPoissonLevelRelaxationFACOperator
+#define included_IBTK_CCPoissonLevelRelaxationFACOperator
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -280,4 +280,4 @@ class CCPoissonLevelRelaxationFACOperator : public PoissonFACPreconditionerStrat
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CCPoissonLevelRelaxationFACOperator
+#endif //#ifndef included_IBTK_CCPoissonLevelRelaxationFACOperator

ibtk/include/ibtk/CCPoissonPETScLevelSolver.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CCPoissonPETScLevelSolver
-#define included_CCPoissonPETScLevelSolver
+#ifndef included_IBTK_CCPoissonPETScLevelSolver
+#define included_IBTK_CCPoissonPETScLevelSolver
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -208,4 +208,4 @@ class CCPoissonPETScLevelSolver : public PETScLevelSolver, public PoissonSolver
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CCPoissonPETScLevelSolver
+#endif //#ifndef included_IBTK_CCPoissonPETScLevelSolver

ibtk/include/ibtk/CCPoissonPointRelaxationFACOperator.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CCPoissonPointRelaxationFACOperator
-#define included_CCPoissonPointRelaxationFACOperator
+#ifndef included_IBTK_CCPoissonPointRelaxationFACOperator
+#define included_IBTK_CCPoissonPointRelaxationFACOperator
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -280,4 +280,4 @@ class CCPoissonPointRelaxationFACOperator : public PoissonFACPreconditionerStrat
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CCPoissonPointRelaxationFACOperator
+#endif //#ifndef included_IBTK_CCPoissonPointRelaxationFACOperator

ibtk/include/ibtk/CCPoissonSolverManager.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CCPoissonSolverManager
-#define included_CCPoissonSolverManager
+#ifndef included_IBTK_CCPoissonSolverManager
+#define included_IBTK_CCPoissonSolverManager
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -183,4 +183,4 @@ class CCPoissonSolverManager
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CCPoissonSolverManager
+#endif //#ifndef included_IBTK_CCPoissonSolverManager

ibtk/include/ibtk/CartCellDoubleBoundsPreservingConservativeLinearRefine.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartCellDoubleBoundsPreservingConservativeLinearRefine
-#define included_CartCellDoubleBoundsPreservingConservativeLinearRefine
+#ifndef included_IBTK_CartCellDoubleBoundsPreservingConservativeLinearRefine
+#define included_IBTK_CartCellDoubleBoundsPreservingConservativeLinearRefine
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -170,4 +170,4 @@ class CartCellDoubleBoundsPreservingConservativeLinearRefine : public SAMRAI::xf
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartCellDoubleBoundsPreservingConservativeLinearRefine
+#endif //#ifndef included_IBTK_CartCellDoubleBoundsPreservingConservativeLinearRefine

ibtk/include/ibtk/CartCellDoubleCubicCoarsen.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartCellDoubleCubicCoarsen
-#define included_CartCellDoubleCubicCoarsen
+#ifndef included_IBTK_CartCellDoubleCubicCoarsen
+#define included_IBTK_CartCellDoubleCubicCoarsen
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -169,4 +169,4 @@ class CartCellDoubleCubicCoarsen : public SAMRAI::xfer::CoarsenOperator<NDIM>
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartCellDoubleCubicCoarsen
+#endif //#ifndef included_IBTK_CartCellDoubleCubicCoarsen

ibtk/include/ibtk/CartCellDoubleLinearCFInterpolation.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartCellDoubleLinearCFInterpolation
-#define included_CartCellDoubleLinearCFInterpolation
+#ifndef included_IBTK_CartCellDoubleLinearCFInterpolation
+#define included_IBTK_CartCellDoubleLinearCFInterpolation
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -260,4 +260,4 @@ class CartCellDoubleLinearCFInterpolation : public CoarseFineBoundaryRefinePatch
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartCellDoubleLinearCFInterpolation
+#endif //#ifndef included_IBTK_CartCellDoubleLinearCFInterpolation

ibtk/include/ibtk/CartCellDoubleQuadraticCFInterpolation.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartCellDoubleQuadraticCFInterpolation
-#define included_CartCellDoubleQuadraticCFInterpolation
+#ifndef included_IBTK_CartCellDoubleQuadraticCFInterpolation
+#define included_IBTK_CartCellDoubleQuadraticCFInterpolation
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -281,4 +281,4 @@ class CartCellDoubleQuadraticCFInterpolation : public CoarseFineBoundaryRefinePa
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartCellDoubleQuadraticCFInterpolation
+#endif //#ifndef included_IBTK_CartCellDoubleQuadraticCFInterpolation

ibtk/include/ibtk/CartCellDoubleQuadraticRefine.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartCellDoubleQuadraticRefine
-#define included_CartCellDoubleQuadraticRefine
+#ifndef included_IBTK_CartCellDoubleQuadraticRefine
+#define included_IBTK_CartCellDoubleQuadraticRefine
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -155,4 +155,4 @@ class CartCellDoubleQuadraticRefine : public SAMRAI::xfer::RefineOperator<NDIM>
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartCellDoubleQuadraticRefine
+#endif //#ifndef included_IBTK_CartCellDoubleQuadraticRefine

ibtk/include/ibtk/CartCellRobinPhysBdryOp.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartCellRobinPhysBdryOp
-#define included_CartCellRobinPhysBdryOp
+#ifndef included_IBTK_CartCellRobinPhysBdryOp
+#define included_IBTK_CartCellRobinPhysBdryOp
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -290,4 +290,4 @@ class CartCellRobinPhysBdryOp : public RobinPhysBdryPatchStrategy
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartCellRobinPhysBdryOp
+#endif //#ifndef included_IBTK_CartCellRobinPhysBdryOp

ibtk/include/ibtk/CartExtrapPhysBdryOp.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartExtrapPhysBdryOp
-#define included_CartExtrapPhysBdryOp
+#ifndef included_IBTK_CartExtrapPhysBdryOp
+#define included_IBTK_CartExtrapPhysBdryOp
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -297,4 +297,4 @@ class CartExtrapPhysBdryOp : public SAMRAI::xfer::RefinePatchStrategy<NDIM>
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartExtrapPhysBdryOp
+#endif //#ifndef included_IBTK_CartExtrapPhysBdryOp

ibtk/include/ibtk/CartGridFunction.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartGridFunction
-#define included_CartGridFunction
+#ifndef included_IBTK_CartGridFunction
+#define included_IBTK_CartGridFunction
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -159,4 +159,4 @@ class CartGridFunction : public virtual SAMRAI::tbox::DescribedClass
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartGridFunction
+#endif //#ifndef included_IBTK_CartGridFunction

ibtk/include/ibtk/CartGridFunctionSet.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartGridFunctionSet
-#define included_CartGridFunctionSet
+#ifndef included_IBTK_CartGridFunctionSet
+#define included_IBTK_CartGridFunctionSet
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -166,4 +166,4 @@ class CartGridFunctionSet : public CartGridFunction
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartGridFunctionSet
+#endif //#ifndef included_IBTK_CartGridFunctionSet

ibtk/include/ibtk/CartSideDoubleCubicCoarsen.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartSideDoubleCubicCoarsen
-#define included_CartSideDoubleCubicCoarsen
+#ifndef included_IBTK_CartSideDoubleCubicCoarsen
+#define included_IBTK_CartSideDoubleCubicCoarsen
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -169,4 +169,4 @@ class CartSideDoubleCubicCoarsen : public SAMRAI::xfer::CoarsenOperator<NDIM>
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartSideDoubleCubicCoarsen
+#endif //#ifndef included_IBTK_CartSideDoubleCubicCoarsen

ibtk/include/ibtk/CartSideDoubleDivPreservingRefine.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartSideDoubleDivPreservingRefine
-#define included_CartSideDoubleDivPreservingRefine
+#ifndef included_IBTK_CartSideDoubleDivPreservingRefine
+#define included_IBTK_CartSideDoubleDivPreservingRefine
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -220,4 +220,4 @@ class CartSideDoubleDivPreservingRefine : public SAMRAI::xfer::RefinePatchStrate
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartSideDoubleDivPreservingRefine
+#endif //#ifndef included_IBTK_CartSideDoubleDivPreservingRefine

ibtk/include/ibtk/CartSideDoubleQuadraticCFInterpolation.h

@@ -30,8 +30,8 @@
 // ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 // POSSIBILITY OF SUCH DAMAGE.
 
-#ifndef included_CartSideDoubleQuadraticCFInterpolation
-#define included_CartSideDoubleQuadraticCFInterpolation
+#ifndef included_IBTK_CartSideDoubleQuadraticCFInterpolation
+#define included_IBTK_CartSideDoubleQuadraticCFInterpolation
 
 /////////////////////////////// INCLUDES /////////////////////////////////////
 
@@ -260,4 +260,4 @@ class CartSideDoubleQuadraticCFInterpolation : public CoarseFineBoundaryRefinePa
 
 //////////////////////////////////////////////////////////////////////////////
 
-#endif //#ifndef included_CartSideDoubleQuadraticCFInterpolation
+#endif //#ifndef included_IBTK_CartSideDoubleQuadraticCFInterpolation