Update precommit (#1326) #2720

Workflow file for this run

	---
	name: Tests

	on: [push, pull_request]

	jobs:
	static:
	name: static checks / linters
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: [3.8, 3.9, '3.10']

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Cache pip
	uses: actions/cache@v4
	with:
	# This path is specific to Ubuntu
	path: ${{ env.pythonLocation }}
	# Look to see if there is a cache hit for the setup file
	key: ${{ runner.os }}-pip-new3-${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}
	restore-keys: \|
	${{ runner.os }}-pip-new3
	${{ runner.os }}-new3
	- name: Install numpy
	run: pip install -U 'numpy<1.24'
	- name: Install dependencies
	run: pip install --upgrade --upgrade-strategy eager .[full,test,dev]
	- name: pip list packages
	run: pip list
	- name: show pip dependencies
	run: \|
	pip install pipdeptree
	pipdeptree -fl
	- name: pre-commit checks
	run: pre-commit run -a
	docs:
	name: Documentation build
	runs-on: ubuntu-latest
	needs: [static]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: 3.8
	- name: Cache pip
	uses: actions/cache@v4
	with:
	# This path is specific to Ubuntu
	path: ${{ env.pythonLocation }}
	# Look to see if there is a cache hit for the setup file
	key: ${{ runner.os }}-pip-new3-${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}
	restore-keys: \|
	${{ runner.os }}-pip-new3
	${{ runner.os }}-new3
	- name: Install doc dependencies
	run: pip install -r docs/requirements.txt
	- name: Install lale
	run: pip install --no-dependencies -e .
	- name: pip list packages
	run: pip list
	- name: Install latex (used for math notation in sphinx)
	run: >
	sudo apt-get update -y &&
	sudo apt-get install -y
	latexmk texlive-latex-recommended texlive-latex-extra texlive-fonts-recommended
	dvipng librsvg2-bin
	- name: Run sphinx
	run: sphinx-build "." "_build" -W --keep-going
	working-directory: ./docs

	# test_matrix_pr and test_matrix_master have a lot of redundancy
	# If GitHub actions adds support for conditional matrix expressions
	# these should be combined, but current workarounds seem overly complex
	test_matrix_pr:
	name: Test (PR)
	runs-on: ubuntu-latest
	if: ${{github.event_name == 'pull_request' }}
	needs: [static]
	strategy:
	fail-fast: false
	matrix:
	test-case:
	- test/test_core_classifiers.py
	- test/test_core_regressors.py
	- test/test_core_transformers.py
	- test/test_core_pipeline.py
	- test/test_custom_schemas.py
	- test/test_json_pretty_viz.py
	- test/test_grammar.py
	- test/test_type_checking.py
	- test/test_interoperability.py
	- test/test_optimizers.py
	- test/test_pipeline.py
	- test/test_autogen_lib.py
	- test/test_snapml.py
	- test/test_relational.py
	- test/test_category_encoders.py
	python-version: [3.9]
	setup-target: ['.[full,test]']
	include:
	- test-case: test/test_core_misc.py
	python-version: 3.8
	setup-target: '.[full,test]'
	- test-case: test/test_core_misc.py
	python-version: 3.9
	setup-target: '.[full,test]'
	- test-case: test/test_core_misc.py
	python-version: '3.10'
	setup-target: '.[full,test]'
	- test-case: test/test_autogen_lib.py
	python-version: 3.8
	setup-target: '.[test]'
	- test-case: test/test_halving_gridsearchcv.py
	python-version: 3.8
	setup-target: '.[test]'
	- test-case: test/test_aif360.py
	python-version: 3.8
	setup-target: '.[full,test]'
	- test-case: test/test_relational_sklearn.py
	python-version: 3.8
	setup-target: '.[full,test]'

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install system packages
	run: sudo apt-get install graphviz swig
	- name: Cache pip
	uses: actions/cache@v4
	with:
	# This path is specific to Ubuntu
	path: ${{ env.pythonLocation }}
	# Look to see if there is a cache hit for the setup file
	key: ${{ runner.os }}-pip-new3-${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}
	restore-keys: \|
	${{ runner.os }}-pip-new3
	${{ runner.os }}-new3
	- name: Install numpy
	run: pip install -U 'numpy<1.24'
	- name: Install dependencies
	run: pip install --upgrade --upgrade-strategy eager ${{matrix.setup-target}}
	- name: Install deps for test_relational_sklearn
	if: ${{ matrix.test-case == 'test/test_relational_sklearn.py' }}
	run: pip install 'scikit-learn>=1.0'
	- name: Install deps for test_snapml
	if: ${{ matrix.test-case == 'test/test_snapml.py' }}
	run: pip install 'numpy>=1.20.1,<1.24'
	- name: Install deps for test_core_pipeline with scipy 1.5.4
	if: ${{ matrix.test-case == 'test/test_core_pipeline.py' }}
	run: pip install 'scipy==1.5.4'
	- name: Imbalanced learn version for Python 3.8
	if: ${{ matrix.test-case == 'test/test_interoperability.py' && matrix.python-version == 3.8}}
	run: pip install 'imbalanced-learn==0.9.0' 'scikit-learn==1.0.2'
	- name: pip list packages
	run: pip list
	- name: show pip dependencies
	run: \|
	pip install pipdeptree
	pipdeptree -fl
	- name: Run test
	run: py.test -v --capture=tee-sys ${{matrix.test-case}}

	test_matrix_master:
	name: Test (master)
	runs-on: ubuntu-latest
	if: ${{ github.event_name == 'push' }}
	needs: [static]
	strategy:
	fail-fast: false
	matrix:
	test-case:
	- test/test_core_classifiers.py
	- test/test_core_regressors.py
	- test/test_core_transformers.py
	- test/test_core_misc.py
	- test/test_core_pipeline.py
	- test/test_custom_schemas.py
	- test/test_json_pretty_viz.py
	- test/test_grammar.py
	- test/test_type_checking.py
	- test/test_interoperability.py
	- test/test_optimizers.py
	- test/test_pipeline.py
	- test/test_autogen_lib.py
	- test/test_relational.py
	- test/test_category_encoders.py
	python-version: [3.8, 3.9, '3.10']
	setup-target: ['.[full,test]']
	include:
	- test-case: test/test_autogen_lib.py
	python-version: 3.8
	setup-target: '.[test]'
	- test-case: test/test_halving_gridsearchcv.py
	python-version: 3.8
	setup-target: '.[test]'
	- test-case: test/test_aif360.py
	python-version: 3.8
	setup-target: '.[full,test]'
	- test-case: test/test_relational_sklearn.py
	python-version: 3.8
	setup-target: '.[test]'
	- test-case: test/test_snapml.py
	python-version: 3.8
	setup-target: '.[full,test]'
	- test-case: test/test_snapml.py
	python-version: 3.9
	setup-target: '.[full,test]'

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install system packages
	run: sudo apt-get install graphviz swig
	- name: Cache pip
	uses: actions/cache@v4
	with:
	# This path is specific to Ubuntu
	path: ${{ env.pythonLocation }}
	# Look to see if there is a cache hit for the setup file
	key: ${{ runner.os }}-pip-new3-${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}
	restore-keys: \|
	${{ runner.os }}-pip-new3
	${{ runner.os }}-new3
	- name: Install numpy
	run: pip install -U 'numpy<1.24'
	- name: Install dependencies
	run: pip install --upgrade --upgrade-strategy eager ${{matrix.setup-target}}
	- name: Install deps for test_relational_sklearn
	if: ${{ matrix.test-case == 'test/test_relational_sklearn.py' }}
	run: pip install 'scikit-learn>=1.0'
	- name: Install deps for test_snapml
	if: ${{ matrix.test-case == 'test/test_snapml.py' }}
	run: pip install 'numpy>=1.20.1,<1.24'
	- name: Imbalanced learn version for Python 3.8
	if: ${{ matrix.test-case == 'test/test_interoperability.py' && matrix.python-version == 3.8}}
	run: pip install 'imbalanced-learn==0.9.0' 'scikit-learn==1.0.2'
	- name: pip list packages
	run: pip list
	- name: show pip dependencies
	run: \|
	pip install pipdeptree
	pipdeptree -fl
	- name: Run test
	run: py.test -v --capture=tee-sys ${{matrix.test-case}}

	test_newer:
	name: Test with newest sklearn
	runs-on: ubuntu-latest
	needs: [static]
	strategy:
	fail-fast: false
	matrix:
	test-case:
	- test/test_core_classifiers.py
	- test/test_core_regressors.py
	- test/test_core_transformers.py
	python-version: ['3.10']
	setup-target: ['.']
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install system packages
	run: sudo apt-get install graphviz swig
	- name: Cache pip
	uses: actions/cache@v4
	with:
	# This path is specific to Ubuntu
	path: ${{ env.pythonLocation }}
	# Look to see if there is a cache hit for the setup file
	key: ${{ runner.os }}-pip-new3-${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}
	restore-keys: \|
	${{ runner.os }}-pip-new3
	${{ runner.os }}-new3
	- name: Install numpy
	run: pip install -U 'numpy<1.24'
	- name: Install dependencies
	run: pip install --upgrade --upgrade-strategy eager ${{matrix.setup-target}}
	- name: Install pytest
	run: pip install pytest
	- name: Install latest scikit-learn, xgboost, and lightgbm
	run: pip install --upgrade --upgrade-strategy eager scikit-learn xgboost lightgbm
	- name: pip list packages
	run: pip list
	- name: show pip dependencies
	run: \|
	pip install pipdeptree
	pipdeptree -fl
	- name: Run test
	run: py.test -v --capture=tee-sys ${{matrix.test-case}}
	continue-on-error: true # we may not yet support the latest scikit-learn version

	test_notebooks_pr:
	name: Test Notebooks (PR)
	needs: [static]
	runs-on: ubuntu-latest
	if: ${{ github.event_name == 'pull_request' }}
	env:
	ALL_NOTEBOOK_CATEGORIES: demo_ docs_ talk_
	strategy:
	fail-fast: false
	matrix:
	category:
	- demo_
	- docs_
	- talk_
	python-version: [3.9]
	setup-target: ['.[full,test]']
	test-case: ['test/test_notebooks.py']
	dir: ['examples']
	nbexcludes: ['']
	include:
	- dir: 'examples/kdd22'
	python-version: 3.9
	setup-target: '.[tutorial,test]'
	test-case: 'test/test_notebooks.py'
	# nbexcludes: '06_multobj.ipynb'

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Cache pip
	uses: actions/cache@v4
	with:
	# This path is specific to Ubuntu
	path: ${{ env.pythonLocation }}
	# Look to see if there is a cache hit for the setup file
	key: ${{ runner.os }}-pip-new3-${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}
	restore-keys: \|
	${{ runner.os }}-pip-new3
	${{ runner.os }}-new3
	- name: Install packages
	run: sudo apt-get install graphviz swig
	- name: Install numpy
	run: pip install -U 'numpy<1.24'
	- name: Install dependencies
	run: pip install --upgrade --upgrade-strategy eager ${{matrix.setup-target}}
	- name: Fix tutorial dependencies
	if: ${{ matrix.dir == 'examples/kdd22' }}
	run: \|
	pip install "pandas<2.0.0" "xgboost<=1.5.1"
	- name: pip list packages
	run: pip list
	- name: show pip dependencies
	run: \|
	pip install pipdeptree
	pipdeptree -fl
	- name: Run test
	run: >
	NOTEBOOK_EXCLUDES="${{matrix.nbexcludes}}"
	NOTEBOOK_DIR=${{matrix.dir}}
	NOTEBOOK_CATEGORY=${{matrix.category}}
	py.test -v --capture=tee-sys ${{matrix.test-case}}

	test_notebooks_master:
	name: Test Notebooks (master)
	needs: [static]
	runs-on: ubuntu-latest
	if: ${{ github.event_name == 'push' }}
	env:
	ALL_NOTEBOOK_CATEGORIES: demo_ docs_ talk_
	strategy:
	fail-fast: false
	matrix:
	category:
	- demo_
	- docs_
	- talk_
	python-version: [3.8, 3.9, '3.10']
	setup-target: ['.[full,test]']
	test-case: ['test/test_notebooks.py']
	dir: ['examples']
	nbexcludes: ['']
	include:
	- dir: 'examples'
	python-version: 3.8
	setup-target: '.[full,test]'
	test-case: 'test/test_notebooks.py'
	nbexcludes: 'demo_auto_pipeline.ipynb'
	- dir: 'examples/kdd22'
	python-version: 3.8
	setup-target: '.[tutorial,test]'
	test-case: 'test/test_notebooks.py'
	nbexcludes: '02_total.ipynb'
	- dir: 'examples/kdd22'
	python-version: 3.9
	setup-target: '.[tutorial,test]'
	test-case: 'test/test_notebooks.py'
	# nbexcludes: '06_multobj.ipynb'
	- dir: 'examples/kdd22'
	python-version: '3.10'
	setup-target: '.[tutorial,test]'
	test-case: 'test/test_notebooks.py'
	# nbexcludes: '06_multobj.ipynb'

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Cache pip
	uses: actions/cache@v4
	with:
	# This path is specific to Ubuntu
	path: ${{ env.pythonLocation }}
	# Look to see if there is a cache hit for the setup file
	key: ${{ runner.os }}-pip-new3-${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}
	restore-keys: \|
	${{ runner.os }}-pip-new3
	${{ runner.os }}-new3
	- name: Install packages
	run: sudo apt-get install graphviz swig
	- name: Install numpy
	run: pip install -U 'numpy<1.24'
	- name: Install dependencies
	run: pip install --upgrade --upgrade-strategy eager ${{matrix.setup-target}}
	- name: Fix tutorial dependencies
	if: ${{ matrix.dir == 'examples/kdd22' }}
	run: \|
	pip install "pandas<2.0.0" "xgboost<=1.5.1"
	- name: pip list packages
	run: pip list
	- name: show pip dependencies
	run: \|
	pip install pipdeptree
	pipdeptree -fl
	- name: Run test
	run: >
	NOTEBOOK_EXCLUDES="${{matrix.nbexcludes}}"
	NOTEBOOK_DIR=${{matrix.dir}}
	NOTEBOOK_CATEGORY=${{matrix.category}}
	py.test -v --capture=tee-sys ${{matrix.test-case}}

	test_fairness:
	name: Test fairness install
	runs-on: ubuntu-latest
	needs: [static]
	strategy:
	fail-fast: false
	matrix:
	test-case:
	- test/test_aif360.py
	- test/test_aif360_ensembles.py
	python-version: [3.8]
	setup-target: ['.[fairness]']
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install system packages
	run: sudo apt-get install graphviz swig
	- name: Install numpy
	run: pip install -U 'numpy<1.24'
	- name: Install pytest
	run: pip install pytest
	- name: Install dependencies
	run: pip install --upgrade --upgrade-strategy eager ${{matrix.setup-target}}
	- name: pip list packages
	run: pip list
	- name: show pip dependencies
	run: \|
	pip install pipdeptree
	pipdeptree -fl
	- name: Run test
	run: py.test -v --capture=tee-sys ${{matrix.test-case}}

	deploy:
	name: Deploy to TestPyPI
	runs-on: ubuntu-latest
	# This should run only on the master branch of the main repo
	if: github.repository == 'IBM/lale' && github.ref == 'refs/heads/master' && success()
	needs: [static, test_matrix_master, test_newer, test_fairness, test_notebooks_master, docs]
	strategy:
	matrix:
	python-version: [3.8]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: pip install wheel twine
	- name: Build distribution
	env:
	# integrate with the current system for timestamping versions
	TRAVIS: " "
	run: python setup.py sdist bdist_wheel
	- name: Publish package to TestPyPI
	run: twine upload -u "__token__" -p "${{ secrets.test_pypi_password }}" -r testpypi dist/*

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Update precommit (#1326) #2720

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Update precommit (#1326) #2720

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