The GSCIT software is designed to estimate the coverage depth and breadth and for quality-profiling of the sequenced reads quickly.
GSCIT is a platform-independent software implementing a novel Hash Table-based mapping algorithm in addition to various other prominent reads-profiling functionalities. The tool's coverage-indicating metrics provide novel insights regarding the input data with a user-friendly interface. In addition, the software does not need user-parameter tuning, as the artificial intelligence-based modules calculate multiple parameters on their own on run-time, which keeps the software from crashing while processing large genomes and limits the processing time.
Note-Once clicked, the software may take 20-30 seconds to show up, depending upon the computer’s configuration.
For each execution run, the software creates a new folder in the directory the software is running. The graphs, plots, and output logs are stored in the same folder.
https://drive.google.com/file/d/1P22lM0RXB_XzwT8EZORY-5_uyQgmu-9l/view?usp=sharing
https://drive.google.com/file/d/1v7lIRkxZ0VtO_N47gkg6QPkasHMsnM3K/view?usp=sharing
https://drive.google.com/file/d/1iAo4wfzDsToJiXTj7jbEi7iZfxwToWA0/view?usp=sharing
https://drive.google.com/file/d/1pc8qf45kCrywoKBXNyTL5d6JDp5Zpt93/view?usp=sharing
https://drive.google.com/file/d/1XWFnU9g14uTzVcSeM5qsMB1JBae0E4yu/view?usp=sharing
Division of Computer Applications, ICAR-Indian Agricultural Statistics Research Institute (IASRI), Library Avenue, Pusa, New Delhi-110012
Contact: shbana.begam@icar.gov.in
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see https://www.gnu.org/licenses/.