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Feature parpe to pypesto history #353

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Feature parpe to pypesto history #353

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PaulJonasJost
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fixes #349

dweindl and others added 9 commits June 28, 2021 09:20
@dweindl
SuperMUC build script: skip boost
7f569a9
@dweindl
Fix race condition with parallel HDF5 calls (#345)
eb33a10 
* Fix race condition with parallel HDF5 calls

Add some locks, in particular for H5Location::nameExists.
Also remove some unnecessary H5File::getId calls.

* Safely close HDF5 files

* Check pthread_create retval

* cleanup
@dweindl
Fix HDF5 generation for state reinitialization with estimated initial…
72f29d9 
… conditions (#344)
@dweindl
Cleanup PEtab import (#346)
46589e5
@dweindl
Update AMICI to develop@8ef53c88 (#347)
e5e4fb3 
git subrepo clone --branch=develop --force git@github.com:AMICI-dev/AMICI.git deps/AMICI 

subrepo:
  subdir:   "deps/AMICI"
  merged:   "8ef53c88"
upstream:
  origin:   "git@github.com:AMICI-dev/AMICI.git"
  branch:   "develop"
  commit:   "8ef53c88"
git-subrepo:
  version:  "0.4.1"
  origin:   "https://github.com/ingydotnet/git-subrepo"
  commit:   "a04d8c2"
@dweindl
Fixup AMICI
98a0746 
AMICI-dev/AMICI#1522
@PaulJonasJost
Merge remote-tracking branch 'origin/develop' into develop
2d1220e 
# Conflicts:
#	deps/AMICI/.gitrepo
#	deps/AMICI/python/amici/__init__.py
@PaulJonasJost
added parPE to pyPESTO optimization + history converter.
38589b2
@PaulJonasJost
updated to pep8 standard
614fc05
@dweindl dweindl linked an issue Jul 13, 2021 that may be closed by this pull request
Converting result files to pypesto format #349
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@sonarcloud
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sonarcloud bot commented Jul 13, 2021

SonarCloud Quality Gate failed.

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 1 Code Smell

0.0% 0.0% Coverage
0.0% 0.0% Duplication

@dweindl dweindl marked this pull request as draft October 4, 2021 10:46
@sonarcloud
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sonarcloud bot commented Oct 4, 2021

Please retry analysis of this Pull-Request directly on SonarCloud.

@dweindl dweindl removed their request for review May 20, 2022 15:51
@sonarcloud
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sonarcloud bot commented Sep 9, 2022

SonarCloud Quality Gate failed.    Quality Gate failed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

0.0% 0.0% Coverage
0.0% 0.0% Duplication

@dweindl dweindl force-pushed the develop branch 2 times, most recently from bbf24f8 to e4fb08a Compare March 28, 2023 07:25
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Successfully merging this pull request may close these issues.

Converting result files to pypesto format
2 participants
@PaulJonasJost @dweindl