fixup

ICB-DCM · Dec 5, 2021 · be9ace2 · be9ace2
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diff --git a/doc/examples.rst b/doc/examples.rst
@@ -76,9 +76,9 @@ Download the examples as notebooks
 * :download:`Model selection <examples/model_selection.ipynb>`
 * :download:`Early stopping of model simulations <examples/early_stopping.ipynb>`
 * :download:`Resuming stored ABC runs <examples/resuming.ipynb>`
-* :download:`Using R <examples/using_R.ipynb>`
-* :download:`Using Julia <examples/using_julia.ipynb>`
-* :download:`Using COPASI <examples/using_copasi.ipynb>`
+* :download:`Using R via rpy2 <examples/using_R.ipynb>`
+* :download:`Using Julia via pyjulia <examples/using_julia.ipynb>`
+* :download:`Using COPASI via BasiCO <examples/using_copasi.ipynb>`
 * :download:`Ordinary differential equations: Conversion reaction <examples/conversion_reaction.ipynb>`
 * :download:`Markov jump process: Reaction network <examples/chemical_reaction.ipynb>`
 * :download:`Multi-scale model: Tumor spheroid growth <examples/multiscale_agent_based.ipynb>`

diff --git a/doc/examples/using_copasi.ipynb b/doc/examples/using_copasi.ipynb
@@ -5,7 +5,7 @@
    "id": "8d1ec590-4bd5-4171-9c26-31786393e991",
    "metadata": {},
    "source": [
-    "# Using COPASI"
+    "# Using COPASI via BasiCO"
    ]
   },
   {

diff --git a/pyabc/copasi/model.py b/pyabc/copasi/model.py
@@ -59,6 +59,7 @@ def __init__(
         method:
             Simulation method, can be any method supported by
             `basico.run_time_course`, in particular:
+
             * deterministic, lsoda: the LSODA implementation
             * stochastic: the Gibson & Bruck Gillespie implementation
             * directMethod: Gillespie Direct Method