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Disentangle amici and roadrunner #1429

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merged 6 commits into from
Jul 18, 2024
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PaulJonasJost
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When installing only pypesto[roadrunner], there are additional amici dependencies, mainly occurring in hierarchical (basically all of them typings, thus fixed through string type annotation)

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codecov-commenter commented Jul 15, 2024

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Codecov Report

Attention: Patch coverage is 80.00000% with 2 lines in your changes missing coverage. Please review.

Project coverage is 83.33%. Comparing base (439c8ac) to head (0b044b1).

Files Patch % Lines
pypesto/hierarchical/ordinal/solver.py 0.00% 1 Missing ⚠️
pypesto/petab/__init__.py 0.00% 1 Missing ⚠️

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Additional details and impacted files
@@           Coverage Diff            @@
##           develop    #1429   +/-   ##
========================================
  Coverage    83.32%   83.33%           
========================================
  Files          161      161           
  Lines        13237    13243    +6     
========================================
+ Hits         11030    11036    +6     
  Misses        2207     2207           

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@dweindl dweindl changed the title Entangle amici and roadrunner Disentangle amici and roadrunner Jul 15, 2024
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Thanks. For all touched Python modules, I'd prefer adding from __future__ import annotations instead of the changes made here. This is will cover any future changes in type annotations there.

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👍

setup.cfg Outdated Show resolved Hide resolved
@@ -1,3 +1,5 @@
from __future__ import annotations
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unused?

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@PaulJonasJost PaulJonasJost Jul 15, 2024

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needed for the ParameterMapping (l168)

Co-authored-by: Daniel Weindl <dweindl@users.noreply.github.com>
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Looks good as far as I can tell.

@PaulJonasJost PaulJonasJost merged commit 3179bbe into develop Jul 18, 2024
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@PaulJonasJost PaulJonasJost deleted the fix_amici_dependencies branch July 18, 2024 07:27
@PaulJonasJost PaulJonasJost mentioned this pull request Jul 25, 2024
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5 participants