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SmilesTo3D.py PyThreadState_Get not working on OSX #30

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diegoenry opened this issue Jul 9, 2018 · 2 comments
Open

SmilesTo3D.py PyThreadState_Get not working on OSX #30

diegoenry opened this issue Jul 9, 2018 · 2 comments
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@diegoenry
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diegoenry commented Jul 9, 2018 •
edited by cbouy
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python SmilesTo3D.py -i test.smi
Fatal Python error: PyThreadState_Get: no current thread

Abort trap: 6

It's a know issue.
rdkit/rdkit#1617
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cbouy commented Jul 10, 2018

Indeed, but the problem is related to rdkit and conda. I've edited your post with the right reference.

Can you try to downgrade your version of conda, as a temporary workaround ?
conda install conda=4.3.25
You might need to try with a completely new conda environment. You can also try to downgrade to python=3.6.1 if it doesn't work.

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cbouy commented Jul 20, 2018

Is this workaround working for you ?

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