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Thanks for reaching out. I don't have a ReplicatedMergeTree in use and, therefore, cannot easily test it. Could you please create a new plain MergeTree table with a small subset of the rows and query it with the RClickhouse package? If it works, the issue is related to the nature of Replicated or Aggregating MergeTrees, and then it is easier for us to debug further.
R code:
Here is the corresponding Clickhouse table schema:
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