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SciSpacy plugin compatibility #425
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eb3a8cb
Added scispacy_model_name
hrshdhgd 7ee548b
Added scispacy_model_name
hrshdhgd 532daa5
version bump for debugging
hrshdhgd 4ed4941
unnecessary docstring
hrshdhgd 16b7759
added models and entityLinkers as enums
hrshdhgd 575c187
added linker cli shortcut -l
hrshdhgd eee606f
undo 2 extra slots and added 1
hrshdhgd 85bdb2e
cleanup
hrshdhgd 0f6146f
rolled back entirely
hrshdhgd 15117af
missed commenting one line
hrshdhgd 9457ed3
reintroduced plugin config
hrshdhgd 4ac82a0
ran make py
hrshdhgd b311984
rollled back version
hrshdhgd 991364b
temp change in version #
hrshdhgd 78b7237
rolled back version
hrshdhgd 9803fd5
temp version bump
hrshdhgd 250140a
version reset to 0
hrshdhgd 8a2e3bc
added model in onfig a version bump
hrshdhgd ca12d06
rolled back version
hrshdhgd 8618aef
added model in CLI
hrshdhgd d41d568
added -m
hrshdhgd 562677d
rolled back version
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,119 +1 @@ | ||
| { | ||
| "$defs": { | ||
| "TextAnnotation": { | ||
| "additionalProperties": false, | ||
| "description": "An individual text annotation", | ||
| "properties": { | ||
| "confidence": { | ||
| "type": "number" | ||
| }, | ||
| "info": { | ||
| "type": "string" | ||
| }, | ||
| "is_longest_match": { | ||
| "type": "boolean" | ||
| }, | ||
| "match_string": { | ||
| "type": "string" | ||
| }, | ||
| "match_type": { | ||
| "type": "string" | ||
| }, | ||
| "object_id": { | ||
| "type": "string" | ||
| }, | ||
| "object_label": { | ||
| "type": "string" | ||
| }, | ||
| "object_source": { | ||
| "type": "string" | ||
| }, | ||
| "predicate_id": { | ||
| "type": "string" | ||
| }, | ||
| "subject_end": { | ||
| "type": "integer" | ||
| }, | ||
| "subject_label": { | ||
| "description": "The portion of the subject text that is matched, ranging from subject_start to subject_end", | ||
| "type": "string" | ||
| }, | ||
| "subject_source": { | ||
| "type": "string" | ||
| }, | ||
| "subject_start": { | ||
| "type": "integer" | ||
| }, | ||
| "subject_text_id": { | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "required": [], | ||
| "title": "TextAnnotation", | ||
| "type": "object" | ||
| }, | ||
| "TextAnnotationResultSet": { | ||
| "additionalProperties": false, | ||
| "description": "A collection of annotation results", | ||
| "properties": { | ||
| "annotations": { | ||
| "description": "all annotations", | ||
| "items": { | ||
| "$ref": "#/$defs/TextAnnotation" | ||
| }, | ||
| "type": "array" | ||
| } | ||
| }, | ||
| "required": [], | ||
| "title": "TextAnnotationResultSet", | ||
| "type": "object" | ||
| }, | ||
| "TextualElement": { | ||
| "additionalProperties": false, | ||
| "description": "", | ||
| "properties": { | ||
| "id": { | ||
| "type": "string" | ||
| }, | ||
| "parent_document": { | ||
| "type": "string" | ||
| }, | ||
| "source_text": { | ||
| "type": "string" | ||
| }, | ||
| "text": { | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "id" | ||
| ], | ||
| "title": "TextualElement", | ||
| "type": "object" | ||
| }, | ||
| "TransformationType": { | ||
| "description": "A controlled datamodels of the types of transformation that can be applied to", | ||
| "enum": [ | ||
| "Stemming", | ||
| "Lemmatization", | ||
| "WordOrderNormalization", | ||
| "Depluralization", | ||
| "CaseNormalization", | ||
| "WhitespaceNormalization", | ||
| "TermExpanson" | ||
| ], | ||
| "title": "TransformationType", | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "$id": "https://w3id.org/linkml/text_annotator", | ||
| "$schema": "http://json-schema.org/draft-07/schema#", | ||
| "additionalProperties": true, | ||
| "metamodel_version": "1.7.0", | ||
| "properties": {}, | ||
| "required": [], | ||
| "title": "text-annotator", | ||
| "type": "object", | ||
| "version": null | ||
| } | ||
|
|
||
| {"$defs": {"TextAnnotation": {"additionalProperties": false, "description": "An individual text annotation", "properties": {"confidence": {"type": "number"}, "info": {"type": "string"}, "is_longest_match": {"type": "boolean"}, "match_string": {"type": "string"}, "match_type": {"type": "string"}, "matches_whole_text": {"type": "boolean"}, "object_id": {"type": "string"}, "object_label": {"type": "string"}, "object_source": {"type": "string"}, "predicate_id": {"type": "string"}, "subject_end": {"type": "integer"}, "subject_label": {"description": "The portion of the subject text that is matched, ranging from subject_start to subject_end", "type": "string"}, "subject_source": {"type": "string"}, "subject_start": {"type": "integer"}, "subject_text_id": {"type": "string"}}, "title": "TextAnnotation", "type": "object"}, "TextAnnotationConfiguration": {"additionalProperties": false, "description": "configuration for search", "properties": {"limit": {"type": "integer"}, "matches_whole_text": {"type": "boolean"}, "model": {"type": "string"}, "sources": {"items": {"type": "string"}, "type": "array"}, "token_exclusion_list": {"items": {"type": "string"}, "type": "array"}}, "title": "TextAnnotationConfiguration", "type": "object"}, "TextAnnotationResultSet": {"additionalProperties": false, "description": "A collection of annotation results", "properties": {"annotations": {"description": "all annotations", "items": {"$ref": "#/$defs/TextAnnotation"}, "type": "array"}}, "title": "TextAnnotationResultSet", "type": "object"}, "TextualElement": {"additionalProperties": false, "description": "", "properties": {"id": {"type": "string"}, "parent_document": {"type": "string"}, "source_text": {"type": "string"}, "text": {"type": "string"}}, "required": ["id"], "title": "TextualElement", "type": "object"}, "TransformationType": {"description": "A controlled datamodels of the types of transformation that can be applied to", "enum": ["Stemming", "Lemmatization", "WordOrderNormalization", "Depluralization", "CaseNormalization", "WhitespaceNormalization", "TermExpanson"], "title": "TransformationType", "type": "string"}}, "$id": "https://w3id.org/linkml/text_annotator", "$schema": "http://json-schema.org/draft-07/schema#", "additionalProperties": true, "metamodel_version": "1.7.0", "title": "text-annotator", "type": "object", "version": null} |
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no point keeping around