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2020-03-06 (1.2.22) ODK Release
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@matentzn matentzn released this 06 Mar 23:32
· 1358 commits to master since this release
v1.2.22
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Learn about vigilant mode.
  • New ROBOT (v. 1.6.0)
  • Bugfixes:
    • Small fixes to update_repo method
    • the sparql query for extracting labeled subsets is now fixed
    • Some unneeded files (ontologyterms.txt) are removed from the default template.
    • a few more files are added to the .gitignore file
    • The catalog file is restructured to preclude Protege from changing it in unwanted ways.
    • the license in the ontology metadata is now required to be an IRI rather than a string.
    • The odk.py should now be executable in a non-docker context
    • JSON versions of imports are not anymore generated. OBO versions are only generated if OBO is used as the edit file serialisation.
    • PAT=false now skips pattern download
  • Fixes to DOSDP pipeline
    • DOSDP tools is updated to version 0.14. This version comes with some great changes, including:
      • a mode in which multiple patterns can be compiled at once (batch mode)
      • we finally have have optional columns and column values!
    • external.txt can now be empty
    • instead of abnormalAnatomicalEntity, an example.yaml is added to the default pattern directory
  • Infrastructure (only relevant to ODK developers):
    • The test framework for ODK is now more dynamic:
      1. Travis now correctly builds the ODK from scratch and runs the tests against the new build version
      2. Instead of adding new tests to the Makefile, you can simply now drop a new YAML file into the tests/ directory.
    • ODK Dockerfile has been optimised a bit for size (avoiding superfluous chmod calls)
    • the yaml loader in the ODK is now replaced by a safe loader
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