Dev pointcloud with examples

.travis.yml

@@ -5,8 +5,6 @@ matrix:
     install:
     - pip install pyshacl
     - pip install pytest
-    before_script:
-    - mv ~/virtualenv/python3.7/bin/owlrl.py ~/virtualenv/python3.7/bin/owlrl
     script:
     - pytest tests
 

shapes/neurosciencegraph/commons/list/examples/datashapes.json

@@ -116,7 +116,7 @@
       "label": "Area Codes List Shape",
       "property": {
         "path": {
-          "oneOrMorePath": {
+          "zeroOrMorePath": {
             "@id": "rdf:rest"
           }
         },

shapes/neurosciencegraph/datashapes/atlas/recordseries/examples/invalid/invalid_recordmeasure_list.json

@@ -0,0 +1,48 @@
+{
+  "@context": [
+    "https://incf.github.io/neuroshapes/contexts/data.json"
+  ],
+  "@type": [
+    "Entity",
+    "RecordSeries",
+    "CellRecordSeries"
+  ],
+  "name": "Whole Brain Cell Positions 1 percent density",
+  "description": "This binary buffer contains the cell positions of 1% of the mouse brain",
+  "isRegisteredIn": {
+    "@type": "nsg:BrainAtlasSpatialReferenceSystem",
+    "@id": "https://example.org/_spatial_reference_system1"
+  },
+  "atlasRelease": {
+    "@id": "https://example.org/atlasRelease1"
+  },
+  "brainLocation": {
+    "atlasSpatialReferenceSystem": {
+      "@type": "nsg:BrainAtlasSpatialReferenceSystem",
+      "@id": "https://example.org/_spatial_reference_system1"
+    },
+    "brainRegion": {
+      "@id": "mba:1",
+      "label": "root"
+    }
+  },
+  "numberOfRecords": 100,
+  "byteOffset": 0,
+  "bufferEncoding": "binary",
+  "endianness": "little",
+  "distribution": {
+    "@type": "DataDownload",
+    "contentSize": {
+      "unitCode": "bytes",
+      "value": 13848730
+    },
+    "contentUrl": "https://example.org/file.xyz",
+    "digest": {
+      "algorithm": "SHA-256",
+      "value": "1234"
+    },
+    "encodingFormat": "application/octet-stream",
+    "name": "file.xyz"
+  },
+  "recordMeasure": 123
+}

shapes/neurosciencegraph/datashapes/atlas/recordseries/examples/invalid/invalid_recordmeasure_wrongtype.json

@@ -0,0 +1,52 @@
+{
+  "@context": [
+    "https://incf.github.io/neuroshapes/contexts/data.json"
+  ],
+  "@type": [
+    "Entity",
+    "RecordSeries",
+    "CellRecordSeries"
+  ],
+  "name": "Whole Brain Cell Positions 1 percent density",
+  "description": "This binary buffer contains the cell positions of 1% of the mouse brain",
+  "isRegisteredIn": {
+    "@type": "nsg:BrainAtlasSpatialReferenceSystem",
+    "@id": "https://example.org/_spatial_reference_system1"
+  },
+  "atlasRelease": {
+    "@id": "https://example.org/atlasRelease1"
+  },
+  "brainLocation": {
+    "atlasSpatialReferenceSystem": {
+      "@type": "nsg:BrainAtlasSpatialReferenceSystem",
+      "@id": "https://example.org/_spatial_reference_system1"
+    },
+    "brainRegion": {
+      "@id": "mba:1",
+      "label": "root"
+    }
+  },
+  "numberOfRecords": 100,
+  "byteOffset": 0,
+  "bufferEncoding": "binary",
+  "endianness": "little",
+  "distribution": {
+    "@type": "DataDownload",
+    "contentSize": {
+      "unitCode": "bytes",
+      "value": 13848730
+    },
+    "contentUrl": "https://example.org/file.xyz",
+    "digest": {
+      "algorithm": "SHA-256",
+      "value": "1234"
+    },
+    "encodingFormat": "application/octet-stream",
+    "name": "file.xyz"
+  },
+  "recordMeasure": [
+    { "@type" : "Person", "name": "Tom"},
+    { "@type" : "Person", "name": "Ana"},
+    { "@type" : "Person", "name": "Sam"}
+  ]
+}

shapes/neurosciencegraph/datashapes/atlas/recordseries/examples/invalid/no_recordmeasure.json

@@ -0,0 +1,47 @@
+{
+  "@context": [
+    "https://incf.github.io/neuroshapes/contexts/data.json"
+  ],
+  "@type": [
+    "Entity",
+    "RecordSeries",
+    "CellRecordSeries"
+  ],
+  "name": "Whole Brain Cell Positions 1 percent density",
+  "description": "This binary buffer contains the cell positions of 1% of the mouse brain",
+  "isRegisteredIn": {
+    "@type": "nsg:BrainAtlasSpatialReferenceSystem",
+    "@id": "https://example.org/_spatial_reference_system1"
+  },
+  "atlasRelease": {
+    "@id": "https://example.org/atlasRelease1"
+  },
+  "brainLocation": {
+    "atlasSpatialReferenceSystem": {
+      "@type": "nsg:BrainAtlasSpatialReferenceSystem",
+      "@id": "https://example.org/_spatial_reference_system1"
+    },
+    "brainRegion": {
+      "@id": "mba:1",
+      "label": "root"
+    }
+  },
+  "numberOfRecords": 100,
+  "byteOffset": 0,
+  "bufferEncoding": "binary",
+  "endianness": "little",
+  "distribution": {
+    "@type": "DataDownload",
+    "contentSize": {
+      "unitCode": "bytes",
+      "value": 13848730
+    },
+    "contentUrl": "https://example.org/file.xyz",
+    "digest": {
+      "algorithm": "SHA-256",
+      "value": "1234"
+    },
+    "encodingFormat": "application/octet-stream",
+    "name": "file.xyz"
+  }
+}

shapes/neurosciencegraph/datashapes/atlas/recordseries/examples/invalid/recordmeasure_no_measuretype.json

@@ -0,0 +1,7 @@
+{
+  "@context": [
+    "https://incf.github.io/neuroshapes/contexts/data.json"
+  ],
+  "@type": "RecordMeasure",
+  "name": "test measure"
+}

shapes/neurosciencegraph/datashapes/atlas/recordseries/examples/valid/recordmeasure.json

@@ -0,0 +1,9 @@
+{
+  "@context": [
+    "https://incf.github.io/neuroshapes/contexts/data.json"
+  ],
+  "@type": "RecordMeasure",
+  "name": "x",
+  "description": "Cell position along the X axis",
+  "componentEncoding": "float32"
+}

shapes/neurosciencegraph/datashapes/atlas/recordseries/examples/valid/recorseries_list.json

@@ -0,0 +1,73 @@
+{
+  "@context": [
+    "https://incf.github.io/neuroshapes/contexts/data.json"
+  ],
+  "@type": [
+    "Entity",
+    "RecordSeries",
+    "CellRecordSeries"
+  ],
+  "name": "Whole Brain Cell Positions 1 percent density",
+  "description": "This binary buffer contains the cell positions of 1% of the mouse brain",
+  "isRegisteredIn": {
+    "@type": "nsg:BrainAtlasSpatialReferenceSystem",
+    "@id": "https://example.org/_spatial_reference_system1"
+  },
+  "atlasRelease": {
+    "@id": "https://example.org/atlasRelease1"
+  },
+  "brainLocation": {
+    "atlasSpatialReferenceSystem": {
+      "@type": "nsg:BrainAtlasSpatialReferenceSystem",
+      "@id": "https://example.org/_spatial_reference_system1"
+    },
+    "brainRegion": {
+      "@id": "mba:1",
+      "label": "root"
+    }
+  },
+  "numberOfRecords": 100,
+  "byteOffset": 0,
+  "bufferEncoding": "binary",
+  "endianness": "little",
+  "distribution": {
+    "@type": "DataDownload",
+    "contentSize": {
+      "unitCode": "bytes",
+      "value": 13848730
+    },
+    "contentUrl": "https://example.org/file.xyz",
+    "digest": {
+      "algorithm": "SHA-256",
+      "value": "1234"
+    },
+    "encodingFormat": "application/octet-stream",
+    "name": "file.xyz"
+  },
+  "recordMeasure": [
+    {
+      "@type": "RecordMeasure",
+      "name": "x",
+      "description": "Cell position along the X axis",
+      "componentEncoding": "float32"
+    },
+    {
+      "@type": "RecordMeasure",
+      "name": "y",
+      "description": "Cell position along the Y axis",
+      "componentEncoding": "float32"
+    },
+    {
+      "@type": "RecordMeasure",
+      "name": "z",
+      "description": "Cell position along the Z axis",
+      "componentEncoding": "float32"
+    },
+    {
+      "@type": "RecordMeasure",
+      "name": "cellType",
+      "description": "Label of the cell type",
+      "componentEncoding": "uint16"
+    }
+  ]
+}