Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Confusion Regarding Determination of Means and Variances in Gaussian Mixture Model for Copy Number Inference #15

Open
bioPG opened this issue Apr 25, 2024 · 0 comments

Comments

@bioPG
Copy link

bioPG commented Apr 25, 2024

Hello, I carefully read through your SMN tool source code and I think your tool is fantastic. I can understand most of it, but I feel a bit confused about how the means and variances of the 11 distributions in the one-dimensional Gaussian mixture model used to convert normalized depth into copy numbers are determined. Are they based on training with a specific dataset?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant