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Add function to create multiresolution segmentation pyramids #253

Merged
merged 32 commits into from
Nov 9, 2023
Merged

Add function to create multiresolution segmentation pyramids #253

merged 32 commits into from
Nov 9, 2023

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CPBridge
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@CPBridge CPBridge commented Sep 14, 2023 •
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Add a new highdicom.seg.create_segmentation_pyramid method to automatically create a multi-resolution representation of whole slide images.

@CPBridge
Add basic tiled_full option
2aee263
@CPBridge
Fixes
29e45bf
@CPBridge
Switch ordering of tiles to actually match TILED_FULL
74d5e83
@CPBridge
Refactor utils code into iter_tiled_full_frame_data
cde407d
@CPBridge
Fix types
8f71961
@CPBridge
Fix tests relating to order of dimension indices
7bbdc26
@CPBridge
Basic implementation of autotiling. Need to add omitting frame logic
b44ff78
@CPBridge
Add frame omission logic and tests
33f635e
@CPBridge
Work in progress implementation of constructing tiled outputs
f15aa1a
@CPBridge
Working implementation of tiled outputs, need tests
6109eed
@CPBridge
Add tests, fix bug with padded tiles
c50614f
@CPBridge
Add doc sections on total pixel matrices for seg creation and parsing
402371a
@CPBridge
Add tiled full test image, links in docs
f1a284b
@CPBridge
Minor typos in docstrings
2d2110e
@CPBridge
Add pyramid utility method
f118207
@CPBridge
Add export of create_segmentation_pyramid
187539c
@CPBridge
Fixes to pyramid
0858800
@CPBridge
Fix error reading TILED_FULL segmentations from file
e8eb0f5
@CPBridge
Merge branch 'feat/autotile' into feat/pyramid
84df578
@CPBridge
Add full docs
811bb59
@CPBridge CPBridge added the enhancement New feature or request label Sep 14, 2023
@CPBridge CPBridge self-assigned this Sep 14, 2023
@CPBridge CPBridge changed the base branch from master to v0.22.0dev September 15, 2023 03:05
@CPBridge CPBridge marked this pull request as ready for review November 9, 2023 04:12
@CPBridge CPBridge changed the title WIP: Add function to create multiresolution segmentation pyramids Add function to create multiresolution segmentation pyramids Nov 9, 2023
@CPBridge CPBridge merged commit 5b7e67a into v0.22.0dev Nov 9, 2023
@CPBridge CPBridge mentioned this pull request Nov 16, 2023
Closed
@CPBridge CPBridge deleted the feat/pyramid branch June 27, 2024 22:47
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@hackermd hackermd Awaiting requested review from hackermd

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