Data and code for: Disentangling marine microbial networks across space

Preprint: https://doi.org/10.1101/2021.07.12.451729

This repository contains the data needed to redo the analysis:

• (The microbial sequence abundances (ASV tables), taxonomic classifications, and environmental data including nutrients)
• the networks
• R-Markdowns for data analysis
• commands to run FlashWeave for network construction
• commands to run EnDED for environmentally-driven-edge-detection and computing Jaccard index (EnDED available here: https://github.com/InaMariaDeutschmann/EnDED)

Citation

Disentangling marine microbial networks across space; Ina Maria Deutschmann, Erwan Delage, Caterina R. Giner, Marta Sebastián, Julie Poulain, Javier Arístegui, Carlos M. Duarte, Silvia G. Acinas, Ramon Massana, Josep M. Gasol, Damien Eveillard, Samuel Chaffron, Ramiro Logares; bioRxiv 2021.07.12.451729; doi: https://doi.org/10.1101/2021.07.12.451729

Contact

Ina Maria Deutschmann

ina.m.deutschmann[at]gmail.com