rec: use gaps in exceptions

Infinidat · Dec 17, 2013 · 56c389a · 56c389a
1 parent 2f88abc
commit 56c389a
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/Makefile b/Makefile
@@ -90,8 +90,8 @@ test: all
 		for f in $(TEST_FILES) ; do \
 			echo $$f $$l...   ; \
 			rm /tmp/mytst.* || true; \
-			./slimfastq -u $$f -f /tmp/mytst -o -l $$l -q && \
-			./slimfastq -u /tmp/mytst.fastq -f /tmp/mytst -o -d && \
+			./slimfastq -u $$f -f /tmp/mytst -O -l $$l -q && \
+			./slimfastq -u /tmp/mytst.fastq -f /tmp/mytst -O -d && \
 			tools/mydiff.pl $$f /tmp/mytst.fastq || break ; \
 		done || break ; \
 	done

diff --git a/recs.cpp b/recs.cpp
@@ -195,7 +195,8 @@ void RecSave::save_2(const UCHAR* buf, const UCHAR* end, const UCHAR* prev_buf,
         // put_type(0, ST_LINE);
         // put_str (0, buf, end-buf);
         // last_map = 0;
-        x_file->put(g_record_count);
+        x_file->put(g_record_count - m_last.index);
+        m_last.index = g_record_count;
         x_file->put_str(buf, end-buf);
 
         stats.new_n ++ ;
@@ -255,7 +256,7 @@ size_t RecLoad::load_2(UCHAR* buf, const UCHAR* prev) {
         // last_map = 0;
         // UCHAR* b = get_str(0, buf);
         UCHAR* b = x_file->get_str(buf);
-        m_last.index = x_file->get();
+        m_last.index += x_file->get();
         return b - buf;
     }