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[0ED6] Pipeline reproduction (SPM raw) #51

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3 of 9 tasks
cmaumet opened this issue Jul 19, 2023 · 1 comment
Open
3 of 9 tasks

[0ED6] Pipeline reproduction (SPM raw) #51

cmaumet opened this issue Jul 19, 2023 · 1 comment
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@cmaumet
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cmaumet commented Jul 19, 2023

Softwares

SPM

Input data

raw data

Additional context

None

List of tasks

Please tick the boxes below once the corresponding task is finished. 👍

  • 👌 A maintainer of the project approved the issue, by assigning a 🏁status: ready for dev label to it.
  • 🌳 Create a branch on your fork to start the reproduction.
  • 🌅 Create a file team_{team_id}.py inside the narps_open/pipelines/ directory. You can use a file inside narps_open/pipelines/templates file as a template if needed.
  • 🧠 Write the code for the pipeline, using Nipype and the file architecture described in docs/pipelines.md.
  • 📘 Make sure your code is documented enough.
  • 🐍 Make sure your code is explicit and conforms with PEP8.
  • 🔬 Create tests for your pipeline. You can use files in tests/pipelines/test_team_* as examples.
  • 🔬 Make sure your code passes all the tests you created (see docs/testing.md).
  • 📥 create a pull request from your code.
@cmaumet cmaumet added the 🚦 status: awaiting triage Has not been triaged & therefore, not ready for work label Jul 19, 2023
@bclenet bclenet added 🏁 status: ready for dev Ready for work and removed 🚦 status: awaiting triage Has not been triaged & therefore, not ready for work labels Jul 20, 2023
@cmaumet cmaumet mentioned this issue Jul 20, 2023
@bclenet bclenet changed the title 0ED6 Pipeline reproduction [0ED6] Pipeline reproduction Jan 9, 2024
@cmaumet cmaumet changed the title [0ED6] Pipeline reproduction [0ED6] Pipeline reproduction (SPM raw) Feb 12, 2024
@bclenet bclenet mentioned this issue Feb 23, 2024
8 tasks
@bclenet
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bclenet commented Jun 11, 2024

Current correlation values with 106 subjects (issues are encountered while processing sub-107 and sub-119) and commit 955dcec :
[0.64, 0.59, 0.64, 0.59, 0.63, -0.30, 0.63, -0.30, 0.53]

For now, the code of #180 is not merged to the project because it contains a dependency to DVARS, whose impact on the project (and CI) should be evaluated first.

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