Merge pull request #4070 from jhlegarreta/FixInsightJournalLinks2

DOC: Change the Insight Journal handle links to insight-journal links
InsightSoftwareConsortium · Jun 16, 2023 · d169343 · d169343
2 parents d6d2656 + 7e000ae
commit d169343
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diff --git a/Modules/Compatibility/Deprecated/include/itkVectorCentralDifferenceImageFunction.h b/Modules/Compatibility/Deprecated/include/itkVectorCentralDifferenceImageFunction.h
@@ -37,7 +37,7 @@ namespace itk
  * \author Tom Vercauteren, INRIA & Mauna Kea Technologies
  *
  * This implementation was taken from the Insight Journal paper:
- * https://hdl.handle.net/1926/510
+ * https://www.insight-journal.org/browse/publication/154
  *
  * \deprecated Please use CentralDifferenceImageFunction instead.
  *

diff --git a/Modules/Filtering/Convolution/include/itkConvolutionImageFilter.h b/Modules/Filtering/Convolution/include/itkConvolutionImageFilter.h
@@ -51,7 +51,7 @@ namespace itk
  *
  * "Image Kernel Convolution"
  * by Tustison N., Gee J.
- * https://insight-journal.org/browse/publication/208
+ * https://www.insight-journal.org/browse/publication/208
  *
  * \author Nicholas J. Tustison
  * \author James C. Gee

diff --git a/Modules/Filtering/ImageGrid/include/itkSliceBySliceImageFilter.h b/Modules/Filtering/ImageGrid/include/itkSliceBySliceImageFilter.h
@@ -65,7 +65,7 @@ namespace itk
  * \author Gaetan Lehmann
  *
  * This class was taken from the Insight Journal paper:
- * https://insight-journal.org/browse/publication/133
+ * https://www.insight-journal.org/browse/publication/133
  *
  * \ingroup ITKImageGrid
  */

diff --git a/Modules/Filtering/ImageIntensity/include/itkMagnitudeAndPhaseToComplexImageFilter.h b/Modules/Filtering/ImageIntensity/include/itkMagnitudeAndPhaseToComplexImageFilter.h
@@ -46,7 +46,7 @@ namespace itk
  * and do not necessarily represent the official view of NCRR or NIH.
  *
  * This class was taken from the Insight Journal paper:
- * https://insight-journal.org/browse/publication/128
+ * https://www.insight-journal.org/browse/publication/128
  *
  * \sa ComposeImageFilter
  *

diff --git a/Modules/Filtering/ImageIntensity/include/itkNormalizeToConstantImageFilter.h b/Modules/Filtering/ImageIntensity/include/itkNormalizeToConstantImageFilter.h
@@ -37,7 +37,7 @@ namespace itk
  *
  * This code was contributed in the Insight Journal paper: "FFT based
  * convolution" by Lehmann G.
- * https://insight-journal.org/browse/publication/717
+ * https://www.insight-journal.org/browse/publication/717
  *
  * \author Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.
  *

diff --git a/Modules/IO/MRC/src/itkMRCImageIOPrivate.h b/Modules/IO/MRC/src/itkMRCImageIOPrivate.h
@@ -25,7 +25,6 @@
  *  "A Streaming IO Base Class and Support for Streaming the MRC and VTK File Format"
  *  by Lowekamp B., Chen D.
  *  https://www.insight-journal.org/browse/publication/729
- *  https://hdl.handle.net/10380/3171
  *
  */
 

diff --git a/Modules/IO/PhilipsREC/include/itkPhilipsPAR.h b/Modules/IO/PhilipsREC/include/itkPhilipsPAR.h
@@ -27,7 +27,7 @@
  *         The Pennsylvania State University 2005
  *
  * This implementation was contributed as a paper to the Insight Journal
- * https://hdl.handle.net/1926/1381
+ * https://www.insight-journal.org/browse/publication/237
  *
  */
 

diff --git a/Modules/IO/PhilipsREC/include/itkPhilipsRECImageIO.h b/Modules/IO/PhilipsREC/include/itkPhilipsRECImageIO.h
@@ -27,7 +27,7 @@
  *         The Pennsylvania State University 2005
  *
  * This implementation was contributed as a paper to the Insight Journal
- * https://hdl.handle.net/1926/1381
+ * https://www.insight-journal.org/browse/publication/237
  *
  */
 

diff --git a/Modules/IO/PhilipsREC/include/itkPhilipsRECImageIOFactory.h b/Modules/IO/PhilipsREC/include/itkPhilipsRECImageIOFactory.h
@@ -31,7 +31,7 @@ namespace itk
  *         The Pennsylvania State University 2005
  *
  * This implementation was contributed as a paper to the Insight Journal
- * https://hdl.handle.net/1926/1381
+ * https://www.insight-journal.org/browse/publication/237
  *
  * \ingroup ITKIOPhilipsREC
  */

diff --git a/Modules/Nonunit/Review/include/itkAreaClosingImageFilter.h b/Modules/Nonunit/Review/include/itkAreaClosingImageFilter.h
@@ -36,7 +36,6 @@ namespace itk
  *
  * "Grayscale morphological attribute operations"
  * by Beare R.
- * https://hdl.handle.net/1926/1316
  * https://www.insight-journal.org/browse/publication/203
  *
  * \author Richard Beare. Department of Medicine, Monash University, Melbourne, Australia.

diff --git a/Modules/Nonunit/Review/include/itkAreaOpeningImageFilter.h b/Modules/Nonunit/Review/include/itkAreaOpeningImageFilter.h
@@ -37,7 +37,6 @@ namespace itk
  *
  * "Grayscale morphological attribute operations"
  * by Beare R.
- * https://hdl.handle.net/1926/1316
  * https://www.insight-journal.org/browse/publication/203
  *
  *

diff --git a/Modules/Nonunit/Review/include/itkAttributeMorphologyBaseImageFilter.h b/Modules/Nonunit/Review/include/itkAttributeMorphologyBaseImageFilter.h
@@ -43,7 +43,6 @@ namespace itk
  *
  * "Grayscale morphological attribute operations"
  * by Beare R.
- * https://hdl.handle.net/1926/1316
  * https://www.insight-journal.org/browse/publication/203
  *
  * \author Richard Beare. Department of Medicine, Monash University, Melbourne, Australia.

diff --git a/Modules/Nonunit/Review/include/itkComplexBSplineInterpolateImageFunction.h b/Modules/Nonunit/Review/include/itkComplexBSplineInterpolateImageFunction.h
@@ -35,7 +35,7 @@ namespace itk
  * Derivative support is currently not implemented
  *
  * This implementation was taken from the Insight Journal paper:
- * https://hdl.handle.net/1926/585
+ * https://www.insight-journal.org/browse/publication/177
  *
  * \ingroup ImageInterpolators
  * \ingroup ITKReview

diff --git a/Modules/Nonunit/Review/include/itkConformalFlatteningMeshFilter.h b/Modules/Nonunit/Review/include/itkConformalFlatteningMeshFilter.h
@@ -36,7 +36,6 @@ namespace itk
  * This code was contributed in the Insight Journal paper:
  * "Conformal Flattening ITK Filter"
  * by Gao Y., Melonakos J., Tannenbaum A.
- * https://hdl.handle.net/1926/225
  * https://www.insight-journal.org/browse/publication/112
  *
  * \ingroup MeshFilters

diff --git a/Modules/Nonunit/Review/include/itkConstrainedRegionBasedLevelSetFunctionSharedData.h b/Modules/Nonunit/Review/include/itkConstrainedRegionBasedLevelSetFunctionSharedData.h
@@ -40,19 +40,16 @@ namespace itk
  *
  *      "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
  *      https://www.insight-journal.org/browse/publication/642
- *      https://hdl.handle.net/10380/3055
  *
  *  That is based on the papers:
  *
  *      "Level Set Segmentation: Active Contours without edge"
  *      https://www.insight-journal.org/browse/publication/322
- *      https://hdl.handle.net/1926/1532
  *
  *      and
  *
  *      "Level set segmentation using coupled active surfaces"
  *      https://www.insight-journal.org/browse/publication/323
- *      https://hdl.handle.net/1926/1533
  *
  *
  * \ingroup ITKReview

diff --git a/Modules/Nonunit/Review/include/itkDirectFourierReconstructionImageToImageFilter.h b/Modules/Nonunit/Review/include/itkDirectFourierReconstructionImageToImageFilter.h
@@ -42,7 +42,7 @@ namespace itk
  * by D. Zosso, M. Bach Cuadra and J. Thiran, August 2007
  *
  * This implementation was taken from the Insight Journal paper:
- * https://hdl.handle.net/1926/585
+ * https://www.insight-journal.org/browse/publication/177
  *
  * \ingroup ImageFilters
  * \ingroup ITKReview

diff --git a/Modules/Nonunit/Review/include/itkDiscreteGaussianDerivativeImageFunction.h b/Modules/Nonunit/Review/include/itkDiscreteGaussianDerivativeImageFunction.h
@@ -37,7 +37,7 @@ namespace itk
  * \author Ivan Macia, Vicomtech, Spain, https://www.vicomtech.org/en
  *
  * This implementation was taken from the Insight Journal paper:
- * https://hdl.handle.net/1926/1290
+ * https://www.insight-journal.org/browse/publication/179
  *
  * \sa NeighborhoodOperator
  * \sa ImageFunction

diff --git a/Modules/Nonunit/Review/include/itkDiscreteGradientMagnitudeGaussianImageFunction.h b/Modules/Nonunit/Review/include/itkDiscreteGradientMagnitudeGaussianImageFunction.h
@@ -37,7 +37,7 @@ namespace itk
  * \author Ivan Macia, Vicomtech, Spain, https://www.vicomtech.org/en
  *
  * This implementation was taken from the Insight Journal paper:
- * https://hdl.handle.net/1926/1290
+ * https://www.insight-journal.org/browse/publication/179
  *
  * \sa NeighborhoodOperator
  * \sa ImageFunction

diff --git a/Modules/Nonunit/Review/include/itkDiscreteHessianGaussianImageFunction.h b/Modules/Nonunit/Review/include/itkDiscreteHessianGaussianImageFunction.h
@@ -36,7 +36,7 @@ namespace itk
  * \author Ivan Macia, Vicomtech, Spain, https://www.vicomtech.org/en
  *
  * This implementation was taken from the Insight Journal paper:
- * https://hdl.handle.net/1926/1290
+ * https://www.insight-journal.org/browse/publication/179
  *
  * \sa NeighborhoodOperator
  * \sa ImageFunction

diff --git a/Modules/Nonunit/Review/include/itkFastApproximateRankImageFilter.h b/Modules/Nonunit/Review/include/itkFastApproximateRankImageFilter.h
@@ -34,7 +34,6 @@ namespace itk
  * This code was contributed in the Insight Journal paper:
  * "Efficient implementation of kernel filtering"
  * by Beare R., Lehmann G
- * https://hdl.handle.net/1926/555
  * https://www.insight-journal.org/browse/publication/160
  *
  * \author Richard Beare

diff --git a/Modules/Nonunit/Review/include/itkGridForwardWarpImageFilter.h b/Modules/Nonunit/Review/include/itkGridForwardWarpImageFilter.h
@@ -51,7 +51,7 @@ namespace itk
  * \author Tom Vercauteren, INRIA & Mauna Kea Technologies
  *
  * This implementation was taken from the Insight Journal paper:
- * https://hdl.handle.net/1926/510
+ * https://www.insight-journal.org/browse/publication/154
  *
  * \ingroup ITKReview
  */

diff --git a/Modules/Nonunit/Review/include/itkMiniPipelineSeparableImageFilter.h b/Modules/Nonunit/Review/include/itkMiniPipelineSeparableImageFilter.h
@@ -37,7 +37,6 @@ namespace itk
  * This code was contributed in the Insight Journal paper:
  * "Efficient implementation of kernel filtering"
  * by Beare R., Lehmann G
- * https://hdl.handle.net/1926/555
  * https://www.insight-journal.org/browse/publication/160
  *
  *

diff --git a/Modules/Nonunit/Review/include/itkMultiphaseDenseFiniteDifferenceImageFilter.h b/Modules/Nonunit/Review/include/itkMultiphaseDenseFiniteDifferenceImageFilter.h
@@ -78,19 +78,16 @@ namespace itk
  *
  *      "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
  *      https://www.insight-journal.org/browse/publication/642
- *      https://hdl.handle.net/10380/3055
  *
  *  That is based on the papers:
  *
  *      "Level Set Segmentation: Active Contours without edge"
  *      https://www.insight-journal.org/browse/publication/322
- *      https://hdl.handle.net/1926/1532
  *
  *      and
  *
  *      "Level set segmentation using coupled active surfaces"
  *      https://www.insight-journal.org/browse/publication/323
- *      https://hdl.handle.net/1926/1533
  *
  *
  * \ingroup ImageFilters

diff --git a/Modules/Nonunit/Review/include/itkMultiphaseFiniteDifferenceImageFilter.h b/Modules/Nonunit/Review/include/itkMultiphaseFiniteDifferenceImageFilter.h
@@ -137,19 +137,16 @@ namespace itk
  *
  *      "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
  *      https://www.insight-journal.org/browse/publication/642
- *      https://hdl.handle.net/10380/3055
  *
  *  That is based on the papers:
  *
  *      "Level Set Segmentation: Active Contours without edge"
  *      https://www.insight-journal.org/browse/publication/322
- *      https://hdl.handle.net/1926/1532
  *
  *      and
  *
  *      "Level set segmentation using coupled active surfaces"
  *      https://www.insight-journal.org/browse/publication/323
- *      https://hdl.handle.net/1926/1533
  *
  *
  * \ingroup ImageFilter

diff --git a/Modules/Nonunit/Review/include/itkMultiphaseSparseFiniteDifferenceImageFilter.h b/Modules/Nonunit/Review/include/itkMultiphaseSparseFiniteDifferenceImageFilter.h
@@ -157,19 +157,16 @@ namespace itk
  *
  *      "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
  *      https://www.insight-journal.org/browse/publication/642
- *      https://hdl.handle.net/10380/3055
  *
  *  That is based on the papers:
  *
  *      "Level Set Segmentation: Active Contours without edge"
  *      https://www.insight-journal.org/browse/publication/322
- *      https://hdl.handle.net/1926/1532
  *
  *      and
  *
  *      "Level set segmentation using coupled active surfaces"
  *      https://www.insight-journal.org/browse/publication/323
- *      https://hdl.handle.net/1926/1533
  *
  * \ingroup ITKReview
  */

diff --git a/Modules/Nonunit/Review/include/itkRegionBasedLevelSetFunction.h b/Modules/Nonunit/Review/include/itkRegionBasedLevelSetFunction.h
@@ -43,19 +43,16 @@ namespace itk
  *
  *      "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
  *      https://www.insight-journal.org/browse/publication/642
- *      https://hdl.handle.net/10380/3055
  *
  *  That is based on the papers:
  *
  *      "Level Set Segmentation: Active Contours without edge"
  *      https://www.insight-journal.org/browse/publication/322
- *      https://hdl.handle.net/1926/1532
  *
  *      and
  *
  *      "Level set segmentation using coupled active surfaces"
  *      https://www.insight-journal.org/browse/publication/323
- *      https://hdl.handle.net/1926/1533
  *
  * NOTE: The convention followed is
  * inside of the level-set function is negative and outside is positive.

diff --git a/Modules/Nonunit/Review/include/itkRegionBasedLevelSetFunctionData.h b/Modules/Nonunit/Review/include/itkRegionBasedLevelSetFunctionData.h
@@ -47,19 +47,16 @@ namespace itk
  *
  *      "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
  *      https://www.insight-journal.org/browse/publication/642
- *      https://hdl.handle.net/10380/3055
  *
  *  That is based on the papers:
  *
  *      "Level Set Segmentation: Active Contours without edge"
  *      https://www.insight-journal.org/browse/publication/322
- *      https://hdl.handle.net/1926/1532
  *
  *      and
  *
  *      "Level set segmentation using coupled active surfaces"
  *      https://www.insight-journal.org/browse/publication/323
- *      https://hdl.handle.net/1926/1533
  *
  *
  * \ingroup ITKReview

diff --git a/Modules/Nonunit/Review/include/itkRegionBasedLevelSetFunctionSharedData.h b/Modules/Nonunit/Review/include/itkRegionBasedLevelSetFunctionSharedData.h
@@ -47,19 +47,16 @@ namespace itk
  *
  *      "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
  *      https://www.insight-journal.org/browse/publication/642
- *      https://hdl.handle.net/10380/3055
  *
  *  That is based on the papers:
  *
  *      "Level Set Segmentation: Active Contours without edge"
  *      https://www.insight-journal.org/browse/publication/322
- *      https://hdl.handle.net/1926/1532
  *
  *      and
  *
  *      "Level set segmentation using coupled active surfaces"
  *      https://www.insight-journal.org/browse/publication/323
- *      https://hdl.handle.net/1926/1533
  *
  *
  * \ingroup ITKReview

diff --git a/Modules/Nonunit/Review/include/itkRobustAutomaticThresholdCalculator.h b/Modules/Nonunit/Review/include/itkRobustAutomaticThresholdCalculator.h
@@ -30,7 +30,6 @@ namespace itk
  * This code was contributed in the Insight Journal paper:
  * "Robust Automatic Threshold Selection"
  * by Lehmann G.
- * https://hdl.handle.net/1926/370
  * https://www.insight-journal.org/browse/publication/134
  *
  *

diff --git a/Modules/Nonunit/Review/include/itkRobustAutomaticThresholdImageFilter.h b/Modules/Nonunit/Review/include/itkRobustAutomaticThresholdImageFilter.h
@@ -37,7 +37,6 @@ namespace itk
  * This code was contributed in the Insight Journal paper:
  * "Robust Automatic Threshold Selection"
  * by Lehmann G.
- * https://hdl.handle.net/1926/370
  * https://www.insight-journal.org/browse/publication/134
  *
  *

diff --git a/Modules/Nonunit/Review/include/itkScalarChanAndVeseDenseLevelSetImageFilter.h b/Modules/Nonunit/Review/include/itkScalarChanAndVeseDenseLevelSetImageFilter.h
@@ -39,19 +39,16 @@ namespace itk
  *
  *      "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
  *      https://www.insight-journal.org/browse/publication/642
- *      https://hdl.handle.net/10380/3055
  *
  *  That is based on the papers:
  *
  *      "Level Set Segmentation: Active Contours without edge"
  *      https://www.insight-journal.org/browse/publication/322
- *      https://hdl.handle.net/1926/1532
  *
  *      and
  *
  *      "Level set segmentation using coupled active surfaces"
  *      https://www.insight-journal.org/browse/publication/323
- *      https://hdl.handle.net/1926/1533
  *
  * \ingroup ITKReview
  */

diff --git a/Modules/Nonunit/Review/include/itkScalarChanAndVeseLevelSetFunction.h b/Modules/Nonunit/Review/include/itkScalarChanAndVeseLevelSetFunction.h
@@ -48,19 +48,16 @@ namespace itk
  *
  *      "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
  *      https://www.insight-journal.org/browse/publication/642
- *      https://hdl.handle.net/10380/3055
  *
  *  That is based on the papers:
  *
  *      "Level Set Segmentation: Active Contours without edge"
  *      https://www.insight-journal.org/browse/publication/322
- *      https://hdl.handle.net/1926/1532
  *
  *      and
  *
  *      "Level set segmentation using coupled active surfaces"
  *      https://www.insight-journal.org/browse/publication/323
- *      https://hdl.handle.net/1926/1533
  *
  * \ingroup ITKReview
  *

diff --git a/Modules/Nonunit/Review/include/itkScalarChanAndVeseLevelSetFunctionData.h b/Modules/Nonunit/Review/include/itkScalarChanAndVeseLevelSetFunctionData.h
@@ -40,19 +40,16 @@ namespace itk
  *
  *      "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
  *      https://www.insight-journal.org/browse/publication/642
- *      https://hdl.handle.net/10380/3055
  *
  *  That is based on the papers:
  *
  *      "Level Set Segmentation: Active Contours without edge"
  *      https://www.insight-journal.org/browse/publication/322
- *      https://hdl.handle.net/1926/1532
  *
  *      and
  *
  *      "Level set segmentation using coupled active surfaces"
  *      https://www.insight-journal.org/browse/publication/323
- *      https://hdl.handle.net/1926/1533
  *
  *
  * \ingroup ITKReview