perf(PythonPackages): Add SIMD support

InsightSoftwareConsortium · May 26, 2023 · 43a937c · 43a937c
1 parent 3fb6d25
commit 43a937c
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Showing 21 changed files with 26 additions and 20 deletions.
diff --git a/packages/compress-stringify/python/itkwasm-compress-stringify-emscripten/pyproject.toml b/packages/compress-stringify/python/itkwasm-compress-stringify-emscripten/pyproject.toml
@@ -32,7 +32,7 @@ keywords = [
 
 requires-python = ">=3.7"
 dependencies = [
-    "itkwasm >= 1.0.b97",
+    "itkwasm >= 1.0.b105",
 ]
 
 [project.urls]

diff --git a/...hon/itkwasm-compress-stringify-wasi/itkwasm_compress_stringify_wasi/compress_stringify.py b/...hon/itkwasm-compress-stringify-wasi/itkwasm_compress_stringify_wasi/compress_stringify.py
@@ -1,8 +1,8 @@
 # Generated file. Do not edit.
 
-from pathlib import Path
+from pathlib import Path, PurePosixPath
 import os
-from typing import Dict, Tuple, Optional
+from typing import Dict, Tuple, Optional, List
 
 from importlib_resources import files as file_resources
 
@@ -44,7 +44,7 @@ def compress_stringify(
     ]
 
     pipeline_inputs: List[PipelineInput] = [
-        PipelineInput(InterfaceTypes.BinaryStream, BinaryStream(input)),
+        PipelineInput(InterfaceTypes.BinaryStream, BinaryStream(PurePosixPath(input))),
     ]
 
     args: List[str] = ['--memory-io',]

diff --git a/...tkwasm-compress-stringify-wasi/itkwasm_compress_stringify_wasi/parse_string_decompress.py b/...tkwasm-compress-stringify-wasi/itkwasm_compress_stringify_wasi/parse_string_decompress.py
@@ -1,8 +1,8 @@
 # Generated file. Do not edit.
 
-from pathlib import Path
+from pathlib import Path, PurePosixPath
 import os
-from typing import Dict, Tuple, Optional
+from typing import Dict, Tuple, Optional, List
 
 from importlib_resources import files as file_resources
 
@@ -36,7 +36,7 @@ def parse_string_decompress(
     ]
 
     pipeline_inputs: List[PipelineInput] = [
-        PipelineInput(InterfaceTypes.BinaryStream, BinaryStream(input)),
+        PipelineInput(InterfaceTypes.BinaryStream, BinaryStream(PurePosixPath(input))),
     ]
 
     args: List[str] = ['--memory-io',]

diff --git a/...-stringify-wasi/itkwasm_compress_stringify_wasi/wasm_modules/compress-stringify.wasi.wasm b/...-stringify-wasi/itkwasm_compress_stringify_wasi/wasm_modules/compress-stringify.wasi.wasm
diff --git a/...ngify-wasi/itkwasm_compress_stringify_wasi/wasm_modules/parse-string-decompress.wasi.wasm b/...ngify-wasi/itkwasm_compress_stringify_wasi/wasm_modules/parse-string-decompress.wasi.wasm
diff --git a/packages/compress-stringify/python/itkwasm-compress-stringify-wasi/pyproject.toml b/packages/compress-stringify/python/itkwasm-compress-stringify-wasi/pyproject.toml
@@ -32,7 +32,7 @@ keywords = [
 
 requires-python = ">=3.7"
 dependencies = [
-    "itkwasm >= 1.0.b97",
+    "itkwasm >= 1.0.b105",
     "importlib_resources",
 
 ]

diff --git a/...ingify/python/itkwasm-compress-stringify/itkwasm_compress_stringify/compress_stringify.py b/...ingify/python/itkwasm-compress-stringify/itkwasm_compress_stringify/compress_stringify.py
@@ -1,6 +1,7 @@
 # Generated file. Do not edit.
 
-from typing import Optional
+import os
+from typing import Dict, Tuple, Optional
 
 from itkwasm import (
     environment_dispatch,

diff --git a/.../python/itkwasm-compress-stringify/itkwasm_compress_stringify/compress_stringify_async.py b/.../python/itkwasm-compress-stringify/itkwasm_compress_stringify/compress_stringify_async.py
@@ -1,6 +1,7 @@
 # Generated file. Do not edit.
 
-from typing import Optional
+import os
+from typing import Dict, Tuple, Optional
 
 from itkwasm import (
     environment_dispatch,

diff --git a/...y/python/itkwasm-compress-stringify/itkwasm_compress_stringify/parse_string_decompress.py b/...y/python/itkwasm-compress-stringify/itkwasm_compress_stringify/parse_string_decompress.py
@@ -1,6 +1,7 @@
 # Generated file. Do not edit.
 
-from typing import Optional
+import os
+from typing import Dict, Tuple, Optional
 
 from itkwasm import (
     environment_dispatch,

diff --git a/...on/itkwasm-compress-stringify/itkwasm_compress_stringify/parse_string_decompress_async.py b/...on/itkwasm-compress-stringify/itkwasm_compress_stringify/parse_string_decompress_async.py
@@ -1,6 +1,7 @@
 # Generated file. Do not edit.
 
-from typing import Optional
+import os
+from typing import Dict, Tuple, Optional
 
 from itkwasm import (
     environment_dispatch,

diff --git a/packages/compress-stringify/python/itkwasm-compress-stringify/pyproject.toml b/packages/compress-stringify/python/itkwasm-compress-stringify/pyproject.toml
@@ -33,7 +33,7 @@ keywords = [
 
 requires-python = ">=3.7"
 dependencies = [
-    "itkwasm >= 1.0.b97",
+    "itkwasm >= 1.0.b105",
     "itkwasm-compress-stringify-wasi; sys_platform != \"emscripten\"",
     "itkwasm-compress-stringify-emscripten; sys_platform == \"emscripten\"",
 ]

diff --git a/packages/dicom/python/itkwasm-dicom-emscripten/pyproject.toml b/packages/dicom/python/itkwasm-dicom-emscripten/pyproject.toml
@@ -32,7 +32,7 @@ keywords = [
 
 requires-python = ">=3.7"
 dependencies = [
-    "itkwasm >= 1.0.b103",
+    "itkwasm >= 1.0.b105",
 ]
 
 [tool.hatch.version]

diff --git a/...sm-dicom-wasi/itkwasm_dicom_wasi/wasm_modules/apply-presentation-state-to-image.wasi.wasm b/...sm-dicom-wasi/itkwasm_dicom_wasi/wasm_modules/apply-presentation-state-to-image.wasi.wasm
diff --git a/.../itkwasm-dicom-wasi/itkwasm_dicom_wasi/wasm_modules/read-dicom-encapsulated-pdf.wasi.wasm b/.../itkwasm-dicom-wasi/itkwasm_dicom_wasi/wasm_modules/read-dicom-encapsulated-pdf.wasi.wasm
diff --git a/...on/itkwasm-dicom-wasi/itkwasm_dicom_wasi/wasm_modules/structured-report-to-html.wasi.wasm b/...on/itkwasm-dicom-wasi/itkwasm_dicom_wasi/wasm_modules/structured-report-to-html.wasi.wasm
diff --git a/...on/itkwasm-dicom-wasi/itkwasm_dicom_wasi/wasm_modules/structured-report-to-text.wasi.wasm b/...on/itkwasm-dicom-wasi/itkwasm_dicom_wasi/wasm_modules/structured-report-to-text.wasi.wasm
diff --git a/packages/dicom/python/itkwasm-dicom-wasi/pyproject.toml b/packages/dicom/python/itkwasm-dicom-wasi/pyproject.toml
@@ -32,7 +32,7 @@ keywords = [
 
 requires-python = ">=3.7"
 dependencies = [
-    "itkwasm >= 1.0.b104",
+    "itkwasm >= 1.0.b105",
     "importlib_resources",
 
 ]

diff --git a/packages/dicom/python/itkwasm-dicom/pyproject.toml b/packages/dicom/python/itkwasm-dicom/pyproject.toml
@@ -33,7 +33,7 @@ keywords = [
 
 requires-python = ">=3.7"
 dependencies = [
-    "itkwasm >= 1.0.b103",
+    "itkwasm >= 1.0.b105",
     "itkwasm-dicom-wasi; sys_platform != \"emscripten\"",
     "itkwasm-dicom-emscripten; sys_platform == \"emscripten\"",
 

diff --git a/src/bindgen/python-resources/template.pyproject.toml b/src/bindgen/python-resources/template.pyproject.toml
@@ -31,7 +31,7 @@ keywords = [
 
 requires-python = ">=3.7"
 dependencies = [
-    "itkwasm >= 1.0.b104",@bindgenDependencies@
+    "itkwasm >= 1.0.b105",@bindgenDependencies@
 ]
 
 [tool.hatch.version]

diff --git a/src/bindgen/python.js b/src/bindgen/python.js
@@ -309,12 +309,14 @@ from itkwasm import (
     if (interfaceJsonTypeToInterfaceType.has(input.type)) {
       const interfaceType = interfaceJsonTypeToInterfaceType.get(input.type)
       switch (interfaceType) {
-        case "TextStream":
-        case "BinaryStream":
         case "TextFile":
         case "BinaryFile":
           pipelineInputs += `        PipelineInput(InterfaceTypes.${interfaceType}, ${interfaceType}(PurePosixPath(${snakeCase(input.name)}))),\n`
           break
+        case "TextStream":
+        case "BinaryStream":
+          pipelineInputs += `        PipelineInput(InterfaceTypes.${interfaceType}, ${interfaceType}(${snakeCase(input.name)})),\n`
+          break
         default:
           pipelineInputs += `        PipelineInput(InterfaceTypes.${interfaceType}, ${snakeCase(input.name)}),\n`
       }

diff --git a/src/itk-wasm-cli.js b/src/itk-wasm-cli.js
@@ -13,7 +13,7 @@ import pythonBindgen from './bindgen/python.js'
 const program = new Command()
 
 // Array of types that will require an import from itk-wasm
-const defaultImageTag = '20230504-85cdcf3f'
+const defaultImageTag = '20230525-bfee36f8'
 
 function processCommonOptions(wasiDefault=false) {
   const options = program.opts()