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Support SSMT in Idmtools #587

Merged
merged 118 commits into from Feb 10, 2020
Merged

Support SSMT in Idmtools #587

merged 118 commits into from Feb 10, 2020

Commits on Jan 20, 2020

  1. Merge pull request #46 from InstituteforDiseaseModeling/dev 

    Get latest dev changes
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    mfisher-idmod committed Jan 20, 2020
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Commits on Jan 22, 2020

  1. Merge pull request #47 from InstituteforDiseaseModeling/dev 

    New general purpose analyzers with examples and tests (#581)
    @mfisher-idmod
    mfisher-idmod committed Jan 22, 2020
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Commits on Jan 23, 2020

  1. Fix #585 and initial platform check-in for SSMT

    @ZDu-IDM
    ZDu-IDM committed Jan 23, 2020
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  2. Add ssmt examples

    @ZDu-IDM
    ZDu-IDM committed Jan 23, 2020
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  3. SSMT: update idmtools.ini

    @ZDu-IDM
    ZDu-IDM committed Jan 23, 2020
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  4. Merge remote-tracking branch 'remotes/upstream/dev' into ssmt

    @ZDu-IDM
    ZDu-IDM committed Jan 23, 2020
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  5. SSMT: add utility files

    @ZDu-IDM
    ZDu-IDM committed Jan 23, 2020
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  6. SSMT: add examples related files

    @ZDu-IDM
    ZDu-IDM committed Jan 23, 2020
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  7. SSMT: update examples

    @ZDu-IDM
    ZDu-IDM committed Jan 23, 2020
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  8. SSMT: update examples using IAnalyzer as class parent

    @ZDu-IDM
    ZDu-IDM committed Jan 23, 2020
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  9. SSMT: code clean up a bit

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    ZDu-IDM committed Jan 23, 2020
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Commits on Jan 24, 2020

  1. SSMT: implemented SSMTWorkItem and WorkItemManager

    @ZDu-IDM
    ZDu-IDM committed Jan 24, 2020
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  2. SSMT: implemented work item operations

    @ZDu-IDM
    ZDu-IDM committed Jan 24, 2020
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  3. SSMT: implemented required changes on iplatform, iplatform_metadata a… 

    …nd enums
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    ZDu-IDM committed Jan 24, 2020
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  4. SSMT: update custom analyzers

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    ZDu-IDM committed Jan 24, 2020
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  5. Merge remote-tracking branch 'remotes/upstream/dev' into ssmt

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    ZDu-IDM committed Jan 24, 2020
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Commits on Jan 27, 2020

  1. SSMT: add len for FileList

    @ZDu-IDM
    ZDu-IDM committed Jan 27, 2020
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  2. SSMT: make sure asset_files working (update SSMT operations)

    @ZDu-IDM
    ZDu-IDM committed Jan 27, 2020
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  3. SSMT: fix existing Suite type checking

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    ZDu-IDM committed Jan 27, 2020
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  4. SSMT: refactor code: use COMPSPlatform (instead of SSMTPlatform) to w… 

    …ork with SSMT
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    ZDu-IDM committed Jan 27, 2020
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  5. SSMT: refactor code: code cleanup

    @ZDu-IDM
    ZDu-IDM committed Jan 27, 2020
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  6. SSMT: refactor code: cleanup code a bit

    @ZDu-IDM
    ZDu-IDM committed Jan 27, 2020
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  7. Merge pull request #48 from ZDu-IDM/ssmt 

    Ssmt
    @mfisher-idmod
    mfisher-idmod committed Jan 27, 2020
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  8. SSMT: update three samples to use COMPSPlatform instead of SSMTPlatform

    @ZDu-IDM
    ZDu-IDM committed Jan 27, 2020
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  9. SSMT: add a new example with Assets

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Commits on Jan 28, 2020

  1. ssmtanalysis test multiple args

    INTERNAL\mfisher committed Jan 28, 2020
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  2. SSMT: SSMTAnalysis now takes platform as one parameter so that it can… 

    … use different configurations
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  3. SSMT: SSMTAnalysis automatically upload idmtools.ini

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Commits on Jan 29, 2020

  1. add tests for ssmt work item scenarios

    INTERNAL\mfisher committed Jan 29, 2020
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  2. Merge pull request #49 from ZDu-IDM/ssmt 

    Ssmt assets, platform takes param and SSMTAnalysis automatically upload idmtools.ini
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    mfisher-idmod committed Jan 29, 2020
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  3. SSMT: feature implementation: WorkItem now can have its own docker image

    @ZDu-IDM
    ZDu-IDM committed Jan 29, 2020
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  4. SSMT: initial implementation: retrieve WorkItem files

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    ZDu-IDM committed Jan 29, 2020
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  5. Merge pull request #50 from ZDu-IDM/ssmt 

    Ssmt retrieve WorkItem files
    @mfisher-idmod
    mfisher-idmod committed Jan 29, 2020
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  6. update for WI docker_image change

    INTERNAL\mfisher committed Jan 29, 2020
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  7. SSMT: refactor LocalOS to make it simpler

    @ZDu-IDM
    ZDu-IDM committed Jan 29, 2020
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Commits on Jan 30, 2020

  1. SSMT: implementation of retrieving files from WorkItem

    @ZDu-IDM
    ZDu-IDM committed Jan 30, 2020
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  2. SSMT: removed ItemType.WorkItem checking

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    ZDu-IDM committed Jan 30, 2020
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  3. Merge pull request #51 from ZDu-IDM/ssmt 

    Ssmt
    @mfisher-idmod
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  4. add members to COMPSPlatform: max_workers and batch_size

    @ZDu-IDM
    ZDu-IDM committed Jan 30, 2020
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  5. SSMT: update idmtools.ini

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    ZDu-IDM committed Jan 30, 2020
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Commits on Jan 31, 2020

  1. additional ssmt and wi tests

    INTERNAL\mfisher committed Jan 31, 2020
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  2. SSMT: fix local_os WINDOWS checking issue

    @ZDu-IDM
    ZDu-IDM committed Jan 31, 2020
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  3. SSMT: removed IPlatformWorkItemOperations

    @ZDu-IDM
    ZDu-IDM committed Jan 31, 2020
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  4. SSMT: add is_task_supported back (removed by mistake)

    @ZDu-IDM
    ZDu-IDM committed Jan 31, 2020
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  5. SSMT: make output folder only available to temType.SIMULATION and Ite… 

    …mType.WORKFLOW_ITEM
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    ZDu-IDM committed Jan 31, 2020
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Commits on Feb 1, 2020

  1. placeholder vistools test

    INTERNAL\mfisher committed Feb 1, 2020
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  2. Merge pull request #52 from ZDu-IDM/ssmt 

    Ssmt fix local_os WINDOWS checking issue
    @mfisher-idmod
    mfisher-idmod committed Feb 1, 2020
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Commits on Feb 3, 2020

  1. SSMT: cast uuid to str

    @ZDu-IDM
    ZDu-IDM committed Feb 3, 2020
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  2. modify test for ssmt analyzer for multiple experiments

    INTERNAL\mfisher committed Feb 3, 2020
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  3. SSMT: track work item created by SSMTAnalysis

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    ZDu-IDM committed Feb 3, 2020
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  4. Merge remote-tracking branch 'remotes/upstream/dev' into ssmt

    @ZDu-IDM
    ZDu-IDM committed Feb 3, 2020
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  5. add run_ssmt_analysis script and fix del_file util ref

    INTERNAL\mfisher committed Feb 3, 2020
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  6. pass exp list

    INTERNAL\mfisher committed Feb 3, 2020
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Commits on Feb 4, 2020

  1. SSMT: add method to retrieve created work item

    @ZDu-IDM
    ZDu-IDM committed Feb 4, 2020
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  2. SSMT: SSMTWorkItem support InputData and vistools and more related ob… 

    …ject
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    ZDu-IDM committed Feb 4, 2020
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  3. SSMT: iplatform implemented get_related_items method

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    ZDu-IDM committed Feb 4, 2020
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  4. Merge pull request #53 from ZDu-IDM/ssmt 

    InputData and Vistools WorkItem support
    @mfisher-idmod
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  5. Fix #596: make sure COMPSPlatform.get_files working for Experiment

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  6. Fix #596: temp workarounds

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  7. SSMT: initial implementation WorkItem Operations to support InputData… 

    … and vistool and related objects
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  8. SSMT: add example for InputDataWorker type

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  9. SSMT: add test files

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    ZDu-IDM committed Feb 4, 2020
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  10. updating to use idmtools workitem support

    INTERNAL\mfisher committed Feb 4, 2020
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  11. Merge pull request #54 from ZDu-IDM/ssmt 

    InputData WorkItem support
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    mfisher-idmod committed Feb 4, 2020
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  12. SSMT: add vistools sample

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  13. SSMT: re-organized WorkItem examples folder structure

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  14. SSMT: delete my test file

    @ZDu-IDM
    ZDu-IDM committed Feb 4, 2020
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  15. add inputdata work item tests

    INTERNAL\mfisher committed Feb 4, 2020
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  16. Merge pull request #55 from ZDu-IDM/ssmt 

    Vistools WI and other example changes
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  17. SSMT: re-organized workitem examples

    @ZDu-IDM
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  18. uncomment unittest import

    @mfisher-idmod
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  19. SSMT: fix import issue due to folder structure changes

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    ZDu-IDM committed Feb 4, 2020
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  20. Merge pull request #56 from ZDu-IDM/ssmt 

    Ssmt reorg workitem examples and fix import issue
    @mfisher-idmod
    mfisher-idmod committed Feb 4, 2020
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  21. clean up SSMT work item tests and typos

    INTERNAL\mfisher committed Feb 4, 2020
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  22. Fix #598

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  23. Adding bin dir for emod example which missing in dev branch

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Commits on Feb 5, 2020

  1. ssmt tests for python analysis non emod

    INTERNAL\mfisher committed Feb 5, 2020
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  2. remove local analysis file

    INTERNAL\mfisher committed Feb 5, 2020
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  3. Merge pull request #57 from ZDu-IDM/ssmt 

    Fix #598
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  4. SSMT: improve code a little bit

    @ZDu-IDM
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  5. Merge remote-tracking branch 'origin/ssmt' into ssmt

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  6. Merge branch 'ssmt' of https://github.com/ZDu-IDM/idmtools into ssmt

    @shchen-idmod
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  7. SSMT: improve IPlatform definition with dataclass field

    @ZDu-IDM
    ZDu-IDM committed Feb 5, 2020
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  8. Merge remote-tracking branch 'origin/ssmt' into ssmt

    @ZDu-IDM
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  9. SSMT: improve IPlatform definition with dataclass field and also impr… 

    …oved get_files_by_id method
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  10. Merge remote-tracking branch 'origin/ssmt' into ssmt

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  11. Merge pull request #58 from ZDu-IDM/ssmt 

    Dev branch changes and SSMT improvements
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  12. Merge pull request #1 from mfisher-idmod/ssmt_tests 

    Add SSMT and WorkItem Tests
    @shchen-idmod
    shchen-idmod committed Feb 5, 2020
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  13. SSMT: code cleanup a bit

    @ZDu-IDM
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  14. SSMT: re-named an example name from simple tp simple_assets

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  15. SSMT: re-named file name FileList.py to file_list.py

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Commits on Feb 6, 2020

  1. update vistools integtation test and add real example

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  2. add missing bin folder

    @shchen-idmod
    shchen-idmod committed Feb 6, 2020
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  3. remove kurt's example and add another general example

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  4. SSMT: initial refactor SSMTWorkItem (updated tests as well)

    @ZDu-IDM
    ZDu-IDM committed Feb 6, 2020
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  5. SSMT: refactor SSMTWorkItem: re-name files

    @ZDu-IDM
    ZDu-IDM committed Feb 6, 2020
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  6. SSMT: add missing files back

    @ZDu-IDM
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  7. SSMT: relocate files

    @ZDu-IDM
    ZDu-IDM committed Feb 6, 2020
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  8. Merge pull request #59 from ZDu-IDM/ssmt 

    SSMT WI cleanup and Vistools test
    @mfisher-idmod
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  9. SSMT: relocate files

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  10. SSMT: update example: removed test parameter

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  11. SSMT: delete un-used data

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    ZDu-IDM committed Feb 6, 2020
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  12. SSMT: fix analyzer command issue

    @ZDu-IDM
    ZDu-IDM committed Feb 6, 2020
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Commits on Feb 7, 2020

  1. Add/update all ssmt integration tests

    @shchen-idmod
    shchen-idmod committed Feb 7, 2020
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  2. Merge pull request #60 from ZDu-IDM/ssmt 

    pull zdu and shchen's changes
    @mfisher-idmod
    mfisher-idmod committed Feb 7, 2020
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  3. fix csvanalyzer test issue in test_analyzers_emod_comps.py and rename… 

    … vistools test folder to short one
    @shchen-idmod
    shchen-idmod committed Feb 7, 2020
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  4. Adding comments for ssmt tests

    @shchen-idmod
    shchen-idmod committed Feb 7, 2020
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  5. add idmtools tags to tests, update inputdata and era5 climate tests

    INTERNAL\mfisher committed Feb 7, 2020
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  6. fix merge conflicts, add tags, fix test names

    INTERNAL\mfisher committed Feb 7, 2020
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  7. Merge branch 'ZDu-IDM-ssmt' into ssmt_tests

    INTERNAL\mfisher committed Feb 7, 2020
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  8. Merge pull request #2 from mfisher-idmod/ssmt_tests 

    Add idmtools tags to tests, update inputdata and era5 climate tests
    @shchen-idmod
    shchen-idmod committed Feb 7, 2020
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  9. fix import issue with test_ssmt_python.py

    @shchen-idmod
    shchen-idmod committed Feb 7, 2020
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  10. remove unused folder which cost some test failed

    @shchen-idmod
    shchen-idmod committed Feb 7, 2020
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  11. SSMT: fix platform unit tests

    @ZDu-IDM
    ZDu-IDM committed Feb 7, 2020
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  12. SSMT: fix task issue

    @ZDu-IDM
    ZDu-IDM committed Feb 7, 2020
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  13. SSMT: fix test_comps_plugin.py issue

    @ZDu-IDM
    ZDu-IDM committed Feb 7, 2020
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Commits on Feb 8, 2020

  1. Fix all failed tests in idmtoold_platform_comps

    @shchen-idmod
    shchen-idmod committed Feb 8, 2020
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  2. Change run test to be able to switch between idmtools and dtktools

    @shchen-idmod
    shchen-idmod committed Feb 8, 2020
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