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Releases: IntelLabs/Trans-Omics-Acceleration-Library

TAL v1.0

20 Nov 21:30
@sanchit-misra sanchit-misra
v1.0
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This is the first release of Trans-Omics Acceleration Library: a library containing key modules for Trans-Omics analysis that are optimized for Xeon CPUs.

This version provides the optimized versions of the following modules and applications:

  • FM-index based sequence search: exact search, inexact search and SMEM search.
  • Dynamic programming based sequence alignment: standard Smith Waterman algorithm and Banded Smith Waterman algorithm as used in BWA-MEM.
  • Dynamic programming based chaining algorithm as used in minimap2.
  • LISA: Learned Indexes for Sequence Analysis containing modules for enhancing FM-index based sequence search and replacing hash-table based k-mer lookup.
  • Minimizer lookup based on hash-table based k-mer lookup.
  • UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction.
  • Deep learning based denoising of ATAC-Seq data.
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