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A toolkit created for some bioinformatics work.

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IvanWoo22/perbool

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PERBOOL

About

As an abbreviation of PERL BIO TOOLS, perbool is a perl toolkit created by Ivan Woo to do some bioinformatics tasks.

Usage

perl fetch_fasta.pl \
    -f mature.fa \
    --string "Spodoptera frugiperda" \
    >sfr_mature.fa
    
cat input.sam | perl 

perl filter_fastq.pl \
    --max 30 --min 20 \
    -i input.fq -o output.fq
    
perl fastqKmer.pl \
    -K 20 \
    -i test.fq -o test.out.fq
    
perl fastq_randomsampling.pl \
    -q 100 \
    -i test.fq -o test.out.fq

Author

Ivan Woo <wuyifanwd@hotmail.com>

License

Copyright © 2019 -IvαnWoo-

This is a free software; You can redistribute it and/or modify it under the same terms.

About

A toolkit created for some bioinformatics work.

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