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metadata.json
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metadata.json
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{
"src/lib/components/DashNgl.react.js": {
"description": "The NglMoleculeViewer is used to render schematic diagrams\nof biomolecules in ribbon-structure representations.\nRead more about the used WebGL protein viewer here:\nhttps://github.com/arose/ngl",
"displayName": "DashNgl",
"methods": [
{
"name": "generateImage",
"docblock": null,
"modifiers": [],
"params": [],
"returns": null
},
{
"name": "highlightAtoms",
"docblock": null,
"modifiers": [],
"params": [
{
"name": "args",
"type": null
},
{
"name": "sele",
"type": null
},
{
"name": "struc",
"type": null
},
{
"name": "chosenAtoms",
"type": null
},
{
"name": "chosenResidues",
"type": null
}
],
"returns": null
},
{
"name": "addMolStyle",
"docblock": null,
"modifiers": [],
"params": [
{
"name": "struc",
"type": null
},
{
"name": "sele",
"type": null
},
{
"name": "chosen",
"type": null
},
{
"name": "color",
"type": null
}
],
"returns": null
},
{
"name": "showStructure",
"docblock": null,
"modifiers": [],
"params": [
{
"name": "stageObj",
"type": null
},
{
"name": "chain",
"type": null
},
{
"name": "aaRange",
"type": null
},
{
"name": "chosen",
"type": null
},
{
"name": "color",
"type": null
},
{
"name": "xOffset",
"type": null
},
{
"name": "sideByside",
"type": null
}
],
"returns": null
},
{
"name": "processDataFromBackend",
"docblock": null,
"modifiers": [],
"params": [
{
"name": "data",
"type": null
},
{
"name": "structuresList",
"type": null
}
],
"returns": null
},
{
"name": "loadData",
"docblock": null,
"modifiers": [],
"params": [
{
"name": "data",
"type": null
},
{
"name": "xOffset",
"type": null
},
{
"name": "sideByside",
"type": null
}
],
"returns": null
}
],
"props": {
"id": {
"type": {
"name": "string"
},
"required": false,
"description": "The ID of this component, used to identify dash components in callbacks.\nThe ID needs to be unique across all of the components in an app."
},
"viewportStyle": {
"type": {
"name": "exact",
"value": {
"width": {
"name": "string",
"required": false
},
"height": {
"name": "string",
"required": false
}
}
},
"required": false,
"description": "The height and the width (in px) of the container\nin which the molecules will be displayed.\nDefault: width:1000px / height:500px\nIt should be in JSON format.",
"defaultValue": {
"value": "{\n width: '500x',\n height: '500px'\n}",
"computed": false
}
},
"stageParameters": {
"type": {
"name": "exact",
"value": {
"quality": {
"name": "string",
"required": false
},
"backgroundColor": {
"name": "string",
"required": false
},
"cameraType": {
"name": "string",
"required": false
}
}
},
"required": false,
"description": "Parameters (in JSON format) for the stage object of ngl.\nCurrently implemented are the quality of the visualisation\nand the background colorFor a full list see:\nhttp://nglviewer.org/ngl/api/file/src/stage/stage.js.html",
"defaultValue": {
"value": "{\n quality: 'medium',\n backgroundColor: 'white',\n cameraType: 'perspective',\n}",
"computed": false
}
},
"imageParameters": {
"type": {
"name": "exact",
"value": {
"antialias": {
"name": "bool",
"required": false
},
"transparent": {
"name": "bool",
"required": false
},
"trim": {
"name": "bool",
"required": false
},
"defaultFilename": {
"name": "string",
"required": false
}
}
},
"required": false,
"description": "Parameters (in JSON format) for exporting the image",
"defaultValue": {
"value": "{\n antialias: true,\n transparent: true,\n trim: true,\n defaultFilename: 'dashNGL_output'\n}",
"computed": false
}
},
"downloadImage": {
"type": {
"name": "bool"
},
"required": false,
"description": "flag if download image was pressed",
"defaultValue": {
"value": "false",
"computed": false
}
},
"pdbString": {
"type": {
"name": "string"
},
"required": false,
"description": "Variable which defines how many molecules should be shown and/or which chain\nThe following format needs to be used:\npdbID1.chain:start-end@atom1,atom2_pdbID2.chain:start-end\n. indicates that only one chain should be shown\n: indicates that a specific amino acid range should be shown (e.g. 1-50)\n@ indicates that chosen atoms should be highlighted (e.g. @50,100,150)\n _ indicates that more than one protein should be shown"
},
"data": {
"type": {
"name": "arrayOf",
"value": {
"name": "exact",
"value": {
"filename": {
"name": "string",
"required": true
},
"ext": {
"name": "string",
"required": true
},
"selectedValue": {
"name": "string",
"required": true
},
"chain": {
"name": "string",
"required": true
},
"aaRange": {
"name": "string",
"required": true
},
"color": {
"name": "string",
"required": true
},
"chosen": {
"name": "exact",
"value": {
"residues": {
"name": "string",
"required": true
},
"atoms": {
"name": "string",
"required": true
}
},
"required": false
},
"config": {
"name": "exact",
"value": {
"type": {
"name": "string",
"required": true
},
"input": {
"name": "string",
"required": true
}
},
"required": false
},
"resetView": {
"name": "bool",
"required": true
},
"uploaded": {
"name": "bool",
"required": true
}
}
}
},
"required": false,
"description": "The data (in JSON format) that will be used to display the molecule\nfilename: name of the used pdb/cif file\next: file extensions (pdb or cif)\nselectedValue: pdbString\nmolStyles: selected molecule representation (cartoon, stick, sphere)\nchain: selected chain\ncolor: chain color\naaRange: selected residues range\nconfig.input: content of the pdb file\nconfig.type: format of config.input\nresetView: bool if the view should be resettet\nuploaded: bool if the file was uploaded",
"defaultValue": {
"value": "[{\n filename: 'placeholder',\n ext: '',\n selectedValue: 'placeholder',\n chain: 'ALL',\n aaRange: 'ALL',\n color: 'red',\n chosen: {\n 'atoms':'',\n 'residues':''\n },\n config: {\n type: 'text/plain',\n input: ''\n },\n uploaded: true,\n resetView: false,\n}]",
"computed": false
}
},
"molStyles": {
"type": {
"name": "exact",
"value": {
"representations": {
"name": "arrayOf",
"value": {
"name": "string"
},
"required": false
},
"chosenAtomsColor": {
"name": "string",
"required": true
},
"chosenAtomsRadius": {
"name": "number",
"required": true
},
"molSpacingXaxis": {
"name": "number",
"required": true
},
"sideByside": {
"name": "bool",
"required": true
}
}
},
"required": false,
"description": "The data (in JSON format) that will be used to style the displayed molecule\nrepresentations: one or multiple selected molecule representation\n - Possible molecule styles:\n 'backbone,'ball+stick','cartoon', 'hyperball','licorice','line',\n 'ribbon',''rope','spacefill','surface','trace','tube'\n - Possible additional representations:\n 'axes','axes+box','helixorient','unitcell'\nchosenAtomsColor: color of the 'ball+stick' representation of the chosen atoms",
"defaultValue": {
"value": "{\n representations:['cartoon','axes+box'],\n chosenAtomsColor:'#808080',\n chosenAtomsRadius: 1,\n molSpacingXaxis: 100,\n sideByside: false,\n}",
"computed": false
}
}
}
}
}