-
Notifications
You must be signed in to change notification settings - Fork 16
/
Dockerfile
49 lines (36 loc) · 1.21 KB
/
Dockerfile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
###########
# BUILDER #
###########
FROM clinicalgenomics/python3.8-venv:1.0 AS builder
ENV PATH="/venv/bin:$PATH"
WORKDIR /app
# Install dependencies
COPY requirements.txt .
RUN pip install --no-cache-dir -r requirements.txt
#########
# FINAL #
#########
FROM python:3.8-slim
LABEL about.home="https://github.com/J35P312/SVDB"
LABEL about.license="MIT License (MIT)"
## Install base dependencies
RUN apt-get update && \
apt-get -y upgrade && \
apt-get -y install -y --no-install-recommends build-essential && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
# Do not upgrade to the latest pip version to ensure more reproducible builds
ENV PIP_DISABLE_PIP_VERSION_CHECK=1
ENV PATH="/venv/bin:$PATH"
RUN echo export PATH="/venv/bin:\$PATH" > /etc/profile.d/venv.sh
## Create a non-root user to run commands
RUN groupadd --gid 1000 worker && useradd -g worker --uid 1000 --shell /usr/sbin/nologin --create-home worker
# Copy virtual environment from builder
COPY --chown=worker:worker --from=builder /venv /venv
WORKDIR /home/worker/app
COPY --chown=worker:worker . /home/worker/app
# Install only Scout app
RUN pip install --no-cache-dir -e .
# Run the app as non-root user
USER worker
ENTRYPOINT [ "svdb" ]