updated example notebook

JBEI · Dec 7, 2017 · a73aab9 · a73aab9
1 parent 6a38d35
commit a73aab9
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/notebooks/lftc_example.ipynb b/notebooks/lftc_example.ipynb
@@ -279,7 +279,9 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Setup simulated annealing problem to identify an improved core, while keeping 100% of the initial core"
+    "Setup simulated annealing problem to identify an improved core, while keeping 100% of the initial core\n",
+    "\n",
+    "Note: the logFile option is not required, and substantially slows down the simulation. If used, you must also remember to run ocp.logFile.close() to close the logfile before reading it."
    ]
   },
   {
@@ -301,7 +303,7 @@
     }
    ],
    "source": [
-    "exchanges = [r.id for r in model.exchanges]\n",
+    "exchanges = {r.id for r in model.exchanges}\n",
     "logFile = tempfile.mktemp()\n",
     "ocp = lftc.OptimalCoreProblem(\n",
     "    state=coreReactionNames,\n",