Popular repositories

1. AnanseSeurat AnanseSeurat Public

   Single cell ANANSE Gene-regulatory-network analysis from Seurat objects

   R 8 2

2. regulatory-networks-in-epidermal-and-corneal-epithelia regulatory-networks-in-epidermal-and-corneal-epithelia Public

   code files related to the manuscript: Cell identity control coordinated by common and distinct transcription factors and associated gene regulatory networks in epidermal and corneal epithelia

   Jupyter Notebook 3

3. gimmemotifs gimmemotifs Public

   Forked from vanheeringen-lab/gimmemotifs

   Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

   Python

4. seq2science seq2science Public

   Forked from vanheeringen-lab/seq2science

   Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and RNA-seq workflows.

   Python

5. ggpubr ggpubr Public

   Forked from kassambara/ggpubr

   'ggplot2' Based Publication Ready Plots

   R

6. ANANSE ANANSE Public

   Forked from vanheeringen-lab/ANANSE

   Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples. http://anansepy.…

   Python