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@JIC-Image-Analysis

JIC-Image-Analysis

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  1. root-3d-segmentation root-3d-segmentation Public

    Scripts to perform a 3D segmentation of a root

    Python 1 1

  2. semi-automated-leaf-segmentation semi-automated-leaf-segmentation Public

    Scripts for helping manual segmentation of leaf into cells and calculating cell areas

    Python 1

  3. yeast_growth yeast_growth Public

    Quantification of yeast growth

    Python

  4. profile_lines profile_lines Public

    Generate 1d data series from line profiles through a 2D image

    Python

  5. pollen_tubes pollen_tubes Public

    Pollen tube analysis

    Python

  6. overview overview Public

    Overview of all JIC Scicomp image analysis projects

    HTML

Repositories

Showing 10 of 40 repositories
  • dtoolbioimage Public

    Bioimaging integration for dtool

    JIC-Image-Analysis/dtoolbioimage’s past year of commit activity
    Python 0 MIT 0 0 12 Updated Feb 10, 2023
  • FISHcountv2 Public

    FISHcount version 2

    JIC-Image-Analysis/FISHcountv2’s past year of commit activity
    Python 0 0 0 7 Updated Dec 8, 2022
  • iview Public

    Vispy based image viewer

    JIC-Image-Analysis/iview’s past year of commit activity
    Python 0 0 0 5 Updated Dec 8, 2022
  • qtagger Public

    Qt based tagging program

    JIC-Image-Analysis/qtagger’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 10, 2022
  • fishtools Public
    JIC-Image-Analysis/fishtools’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Apr 20, 2022
  • root_measurement Public

    Python code for taking measurements from confocal images of arabidopsis roots

    JIC-Image-Analysis/root_measurement’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 14, 2022
  • dbimage Public

    Blosc compressed numpy image format

    JIC-Image-Analysis/dbimage’s past year of commit activity
    Python 0 0 0 0 Updated Feb 2, 2021
  • point-picker Public

    Tool for setting points on 2D images

    JIC-Image-Analysis/point-picker’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 6, 2021
  • lhp1-analysis Public
    JIC-Image-Analysis/lhp1-analysis’s past year of commit activity
    Python 0 0 0 0 Updated Oct 28, 2020
  • roi2json Public

    ImageJ ROI conversion library

    JIC-Image-Analysis/roi2json’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 18, 2020
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