A python command-line utility for the generation of comprehensive reports on the quality of ribosome profiling (Ribo-Seq) datasets
- Free software: MIT license
- Documentation: https://RiboMetric.readthedocs.io.
To install RiboMetric:
$ pip install RiboMetricCreate annotation files from gff files:
$ RiboMetric preprare -g gff_file.gffUse the annotation file to run RiboMetric on a bam file:
$ RiboMetric run -b bam_file.bam -a annotation_RiboMetric.tsvFor more information on how to use RiboMetric, see the documentation or use --help
There are a number of limitations to running RiboMetric at the moment. These include:
- Transciptomic alignments are required in BAM format
- GFF annotations from Ensembl are also requried
This project was worked on by Lukas Wierdsma during his Internship at the UCC for Bioinformatics, Howest in 2023.
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.