Update vignettes to snake_case, and other code quality updates

DESCRIPTION

@@ -13,7 +13,7 @@ Description: Simplifies the creation of 'xlsx' files by
     providing a high level interface to writing, styling and editing
     worksheets.
 License: MIT + file LICENSE
-URL: https://github.com/JanMarvin/openxlsx2
+URL: https://janmarvin.github.io/openxlsx2/, https://github.com/JanMarvin/openxlsx2
 BugReports: https://github.com/JanMarvin/openxlsx2/issues
 Depends:
     R (>= 3.5.0)
@@ -28,12 +28,10 @@ Imports:
 LinkingTo:
     Rcpp
 Suggests:
-    covr,
     ggplot2,
     knitr,
     mschart (>= 0.4),
     rmarkdown,
-    roxygen2,
     rvg,
     testthat (>= 3.0.0),
     waldo

NEWS.md

@@ -1,6 +1,7 @@
 # openxlsx2 (development version)
 
-## New features
+
+## API Change
 
 * Function arguments are now defaulting to `snake_case`. For the time being, both arguments are accepted and `camelCase` will be switched to `snake_case` under the hood. Documentation like vignettes and examples are currently still displaying `camelCase` and maybe some `camelCase` function slipped through.  [678](https://github.com/JanMarvin/openxlsx2/pull/678)
 
@@ -22,6 +23,10 @@
   * make `get_cell_refs()`, `get_date_origin()`, `guess_col_type()`, and `write_file()` internal functions
   * make classes `styles_mgr()`, `wbSheetData`, `wbWorksheet`, `wbChartsheet`, `wbComment`, `wbHyperlink` internal
 
+## Refactoring
+
+* Cleanup / revisit documentation and vignettes  ([682](https://github.com/JanMarvin/openxlsx2/pull/682), @olivroy)
+
 ***************************************************************************
 
 

R/baseXML.R

@@ -58,7 +58,6 @@ genClientData <- function(col, row, visible, height, width) {
 #' @param range range (input cell range)
 #' @param type type (Checkbox, Radio, Drop)
 #' @param checked checked (bool)
-#' @keywords internal
 #' @noRd
 genClientDataFC <- function(left, top, right, bottom, link, range, type, checked) {
 

R/class-color.R

@@ -6,7 +6,6 @@
 #' @param theme A zero based index referencing a value in the theme.
 #' @param tint A tint value applied. Range from -1 (dark) to 1 (light).
 #' @return a `wbColour` object
-#' @rdname wbColour
 #' @export
 wb_color <- function(
     name = NULL,
@@ -38,7 +37,7 @@ wb_color <- function(
 }
 
 #' @export
-#' @rdname wbColour
+#' @rdname wb_color
 #' @usage NULL
 wb_colour <- wb_color
 

R/class-comment.R

@@ -2,7 +2,6 @@
 #'
 #' A comment
 #'
-#' @keywords internal
 #' @noRd
 wbComment <- R6::R6Class(
   "wbComment",

R/class-hyperlink.R

@@ -2,7 +2,6 @@
 #'
 #' A hyperlink
 #'
-#' @keywords internal
 #' @noRd
 wbHyperlink <- R6::R6Class(
   "wbHyperlink",

R/class-sheet-data.R

@@ -3,7 +3,6 @@
 #'
 #' A hyperlink
 #'
-#' @keywords internal
 #' @noRd
 wbSheetData <- R6::R6Class(
   "wbSheetData",
@@ -30,7 +29,6 @@ wbSheetData <- R6::R6Class(
 
 ## TODO is this even used?
 #' @rdname wbSheetData
-#' @keywords internal
 #' @noRd
 wb_sheet_data <- function() {
   wbSheetData$new()

R/class-style_mgr.R

@@ -65,7 +65,6 @@
 #' wb$set_cell_style("SUM", "C7:C16", wb$styles_mgr$get_xf_id("new_xf"))
 #' # wb_open(wb)
 #'
-#' @keywords internal
 #' @noRd
 style_mgr <- R6::R6Class("wbStylesMgr", {
 

R/class-workbook-wrappers.R

@@ -312,14 +312,13 @@ wb_add_pivot_table <- function(
 #'
 #' @details Currently only the English version of functions are supported. Please don't use the local translation.
 #' The examples below show a small list of possible formulas:
-#' \itemize{
-#'     \item{SUM(B2:B4)}
-#'     \item{AVERAGE(B2:B4)}
-#'     \item{MIN(B2:B4)}
-#'     \item{MAX(B2:B4)}
-#'     \item{...}
 #'
-#' }
+#' * SUM(B2:B4)
+#' * AVERAGE(B2:B4)
+#' * MIN(B2:B4)
+#' * MAX(B2:B4)
+#' * ...
+#'
 #' @param wb A Workbook object containing a worksheet.
 #' @param sheet The worksheet to write to. Can be the worksheet index or name.
 #' @param x A character vector.
@@ -880,7 +879,7 @@ wb_remove_row_heights <- function(wb, sheet = current_sheet(), rows) {
 #' require(ggplot2)
 #' p1 <- ggplot(mtcars, aes(x = mpg, fill = as.factor(gear))) +
 #'   ggtitle("Distribution of Gas Mileage") +
-#'   geom_density(alpha = I(.5))
+#'   geom_density(alpha = 0.5)
 #' p2 <- ggplot(Orange, aes(x = age, y = circumference, color = Tree)) +
 #'   geom_point() + geom_line()
 #'

R/class-workbook.R

@@ -6782,7 +6782,7 @@ wbWorkbook <- R6::R6Class(
 
       sheet <- as.character(sheet)
       if (has_illegal_chars(sheet)) {
-        stop("illegal characters found in sheet. Please remove. See ?openxlsx::clean_worksheet_name")
+        stop("illegal characters found in sheet. Please remove. See ?openxlsx2::clean_worksheet_name")
       }
 
       if (!nzchar(sheet)) {

R/class-worksheet.R

@@ -5,7 +5,6 @@
 #'
 #' A Worksheet
 #'
-#' @keywords internal
 #' @noRd
 wbWorksheet <- R6::R6Class(
   "wbWorksheet",

R/conditional_formatting.R

@@ -2,7 +2,6 @@
 #' @name cf_rules
 #' @param formula formula
 #' @param values values
-#' @keywords internal
 #' @noRd
 cf_create_colorscale <- function(formula, values) {
 
@@ -84,11 +83,10 @@ cf_create_colorscale <- function(formula, values) {
 }
 
 #' @rdname cf_rules
+#' @details `cf_create_databar()` returns extLst for worksheet
 #' @param extLst extLst
 #' @param params params
 #' @param sqref sqref
-#' @keywords internal
-#' @details `cf_create_databar()` returns extLst for worksheet
 #' @noRd
 cf_create_databar <- function(extLst, formula, params, sqref, values) {
   if (length(formula) == 2L) {
@@ -201,7 +199,6 @@ cf_create_databar <- function(extLst, formula, params, sqref, values) {
 #' @rdname cf_rules
 #' @param dxfId dxfId
 #' @param formula formula
-#' @keywords internal
 #' @noRd
 cf_create_expression <- function(dxfId, formula) {
   cf_rule <- sprintf(
@@ -218,7 +215,6 @@ cf_create_expression <- function(dxfId, formula) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_create_duplicated_values <- function(dxfId) {
   cf_rule <- sprintf(
@@ -231,7 +227,6 @@ cf_create_duplicated_values <- function(dxfId) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_create_contains_text <- function(dxfId, sqref, values) {
   cf_rule <- sprintf(
@@ -250,7 +245,6 @@ cf_create_contains_text <- function(dxfId, sqref, values) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_create_not_contains_text <- function(dxfId, sqref, values) {
   cf_rule <- sprintf(
@@ -269,7 +263,6 @@ cf_create_not_contains_text <- function(dxfId, sqref, values) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_begins_with <- function(dxfId, sqref, values) {
   cf_rule <- sprintf(
@@ -289,7 +282,6 @@ cf_begins_with <- function(dxfId, sqref, values) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_ends_with <- function(dxfId, sqref, values) {
   cf_rule <- sprintf(
@@ -309,7 +301,6 @@ cf_ends_with <- function(dxfId, sqref, values) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_between <- function(dxfId, formula) {
   cf_rule <- sprintf(
@@ -328,7 +319,6 @@ cf_between <- function(dxfId, formula) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_top_n <- function(dxfId, values) {
   cf_rule <- sprintf(
@@ -343,7 +333,6 @@ cf_top_n <- function(dxfId, values) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_bottom_n <- function(dxfId, values) {
   cf_rule <- sprintf(
@@ -358,7 +347,6 @@ cf_bottom_n <- function(dxfId, values) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_icon_set <- function(
     values,
@@ -423,7 +411,6 @@ cf_icon_set <- function(
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_unique_values <- function(dxfId) {
   cf_rule <- sprintf(
@@ -435,7 +422,6 @@ cf_unique_values <- function(dxfId) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_iserror <- function(dxfId, sqref) {
   cf_rule <- sprintf(
@@ -452,7 +438,6 @@ cf_iserror <- function(dxfId, sqref) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_isnoerror <- function(dxfId, sqref) {
   cf_rule <- sprintf(
@@ -469,7 +454,6 @@ cf_isnoerror <- function(dxfId, sqref) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_isblank <- function(dxfId, sqref) {
   cf_rule <- sprintf(
@@ -486,7 +470,6 @@ cf_isblank <- function(dxfId, sqref) {
 }
 
 #' @rdname cf_rules
-#' @keywords internal
 #' @noRd
 cf_isnoblank <- function(dxfId, sqref) {
   cf_rule <- sprintf(

R/converters.R

@@ -59,7 +59,6 @@ col2int <- function(x) {
 #' # "B1"
 #' get_cell_refs(data.frame(1:3, 2:4))
 #' # "B1" "C2" "D3"
-#' @keywords internal
 #' @noRd
 get_cell_refs <- function(cellCoords) {
   assert_class(cellCoords, "data.frame")
@@ -79,7 +78,6 @@ get_cell_refs <- function(cellCoords) {
 #'
 #' @param base_font the base font name and fontsize
 #' @param col_width column width
-#' @keywords internal
 #' @examples
 #' base_font <- wb_get_base_font(wb)
 #' calc_col_width(base_font, col_width = 10)