* Update version to 4.10-14 to match current CRAN version

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: Matching
-Version: 4.10-8
-Date: 2022-11-03
+Version: 4.10-14
+Date: 2023-09-13
 Title: Multivariate and Propensity Score Matching with Balance
         Optimization
 Authors@R: c(

R/GenMatching.R

@@ -364,7 +364,7 @@ GenMatch <- function(Tr, X, BalanceMatrix=X, estimand="ATT", M=1,
     #print warning if pop.size, max.generations and wait.generations are all set to their original values
     if(pop.size==100 & max.generations==100 & wait.generations==4)
       {
-        warning("The key tuning parameters for optimization were are all left at their default values.  The 'pop.size' option in particular should probably be increased for optimal results.  For details please see the help page and http://sekhon.berkeley.edu/papers/MatchingJSS.pdf")
+        warning("The key tuning parameters for optimization were are all left at their default values.  The 'pop.size' option in particular should probably be increased for optimal results.  For details please see the help page and https://www.jsekhon.com")
       }
 
     #loss function

R/Matching.R

@@ -1,5 +1,5 @@
 # Jasjeet S. Sekhon <sekhon@berkeley.edu>
-# HTTP://sekhon.berkeley.edu/
+# https://www.jsekhon.com
 # UC Berkeley
 
 # Match(): function to estimate treatments using a matching estimator.
@@ -3039,7 +3039,7 @@ VarCalcMatchC <- function(N, xvars, Var.calc, cdd, caliperflag, ww, Tr, Xmod, Ca
   BuildDate <- packageDescription("Matching", lib.loc = MatchLib)$Date
 
   foo <- paste("## \n##  Matching (Version ", version, ", Build Date: ", BuildDate, ")\n", 
-               "##  See http://sekhon.berkeley.edu/matching for additional documentation.\n",
+               "##  See https://www.jsekhon.com for additional documentation.\n",
                "##  Please cite software as:\n",
                "##   Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching\n",
                "##   Software with Automated Balance Optimization: The Matching package for R.''\n",

inst/CITATION

@@ -1,9 +1,9 @@
 citHeader("To cite 'Matching' in publications use:")
 
-citEntry(
+bibentry(
   entry = "Article",
   title        = "Multivariate and Propensity Score Matching Software with Automated Balance Optimization: The {Matching} Package for {R}",
-  author       = personList(as.person("Jasjeet S. Sekhon")),
+  author       = c(as.person("Jasjeet S. Sekhon")),
   journal      = "Journal of Statistical Software",
   year         = "2011",
   volume       = "42",
@@ -15,30 +15,32 @@ citEntry(
   paste("Jasjeet S. Sekhon (2011).",
         "Multivariate and Propensity Score Matching Software with Automated Balance Optimization: The Matching Package for R.",
         "Journal of Statistical Software, 42(7), 1-52.",
-        "<doi:10.18637/jss.v042.i07>")
+        "<doi:10.18637/jss.v042.i07>"),
+        bibtype = "Article"
 )
 
-citEntry(header="To refer to the theory on which this package is based:",
+bibentry(header="To refer to the theory on which this package is based:",
   entry="Article",
   title = "Genetic Matching for Estimating Causal Effects: A General Multivariate Matching Method for Achieving Balance in Observational Studies",
-  author  = personList(as.person("Alexis Diamond"),as.person("Jasjeet S. Sekhon")),
+  author  = c(as.person("Alexis Diamond"),as.person("Jasjeet S. Sekhon")),
   journal = "Review of Economics and Statistics",
   volume = "95",
   number = "3",
   pages = "932--945",
   year = "2013",
-  url  = "http://sekhon.berkeley.edu/papers/GenMatch.pdf",
+  url  = "https://www.jsekhon.com",
 
   textVersion  =
   paste("Alexis Diamond and Jasjeet S. Sekhon",
         "Genetic Matching for Estimating Causal Effects: A General Multivariate Matching Method for Achieving Balance in Observational Studies.",
-        "Review of Economics and Statistics. 95 (3): 932--945. 2013.")
+        "Review of Economics and Statistics. 95 (3): 932--945. 2013."),
+        bibtype = "Article"
 )
 
-citEntry(header="Further developing the theory and practice:",
+bibentry(header="Further developing the theory and practice:",
   entry="Article",
   title = "A Matching Method For Improving Covariate Balance in Cost-Effectiveness Analyses",
-  author = personList(as.person("Jasjeet Singh Sekhon"),as.person("Richard D. Grieve")),
+  author = c(as.person("Jasjeet Singh Sekhon"),as.person("Richard D. Grieve")),
   journal      = "Health Economics",
   volume = "21",
   number = "6",
@@ -49,7 +51,8 @@ citEntry(header="Further developing the theory and practice:",
   paste("Jasjeet Singh Sekhon and Richard D. Grieve (2012).",
     "A Matching Method For Improving Covariate Balance in Cost-Effectiveness Analyses.",
     "Health Economics, 21(6), 695-714."
-    )
+    ),
+        bibtype = "Article"
 )
 
 citFooter("BibTeX entries for LaTeX users: use\n", sQuote('toBibtex(citation("Matching"))'))

inst/extras/cblas_dasum.c

@@ -9,7 +9,8 @@
  */
 
 #include <R.h>
-#include <R_ext/Applic.h> /* R blas declarations */
+#include <R_ext/Applic.h> /* No longer contains R blas declarations */
+#include <R_ext/BLAS.h> /* New R blas declarations */
 
 #include "cblas.h"
 double cblas_dasum( const int N, const double *X, const int incX) 

inst/extras/cblas_dgemm.c

@@ -8,7 +8,8 @@
  */
 
 #include <R.h>
-#include <R_ext/Applic.h> /* R blas declarations */
+#include <R_ext/Applic.h> /* No longer contains R blas declarations */
+#include <R_ext/BLAS.h> /* New R blas declarations */
 
 #include "cblas.h"
 void cblas_dgemm(const enum CBLAS_ORDER Order, const enum CBLAS_TRANSPOSE TransA,

inst/extras/cblas_dscal.c

@@ -8,7 +8,8 @@
  */
 
 #include <R.h>
-#include <R_ext/Applic.h> /* R blas declarations */
+#include <R_ext/Applic.h> /* No longer contains R blas declarations */
+#include <R_ext/BLAS.h> /* New R blas declarations */
 
 #include "cblas.h"
 void cblas_dscal( const int N, const double alpha, double *X, 

inst/extras/cblas_dsymm.c

@@ -8,7 +8,8 @@
  */
 
 #include <R.h>
-#include <R_ext/Applic.h> /* R blas declarations */
+#include <R_ext/Applic.h> /* No longer contains R blas declarations */
+#include <R_ext/BLAS.h> /* New R blas declarations */
 
 #include "cblas.h"
 void cblas_dsymm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,

inst/extras/cblas_dtrmm.c

@@ -8,7 +8,8 @@
  */
 
 #include <R.h>
-#include <R_ext/Applic.h> /* R blas declarations */
+#include <R_ext/Applic.h> /* No longer contains R blas declarations */
+#include <R_ext/BLAS.h> /* New R blas declarations */
 
 #include "cblas.h"
 void cblas_dtrmm(const enum CBLAS_ORDER Order, const enum CBLAS_SIDE Side,

man/GenMatch.Rd

@@ -123,7 +123,7 @@ GenMatch(Tr, X, BalanceMatrix=X, estimand="ATT", M=1, weights=NULL,
     below.  And the second being a matrix which contains the variables to
     be balanced---i.e., the \code{BalanceMatrix} the user provided to
     \code{GenMatch}. For an example see
-    \url{http://sekhon.berkeley.edu/matching/R/my_fitfunc.R}.}
+    \url{https://www.jsekhon.com}.}
   \item{MemoryMatrix}{
     This variable controls if \code{\link[rgenoud]{genoud}} sets up a memory matrix.  Such a
     matrix ensures that \code{\link[rgenoud]{genoud}} will request the fitness evaluation
@@ -321,9 +321,9 @@ GenMatch(Tr, X, BalanceMatrix=X, estimand="ATT", M=1, weights=NULL,
     cluster object to \code{GenMatch}. For an example of how to manually
     setup up a cluster with a direct call to
     \code{\link[parallel]{makeCluster}} see
-    \url{http://sekhon.berkeley.edu/matching/R/cluster_manual.R}.  For
+    \url{https://www.jsekhon.com}.  For
     an example of how to get around a firewall by ssh tunneling see:
-    \url{http://sekhon.berkeley.edu/matching/R/cluster_manual_tunnel.R}.}
+    \url{https://www.jsekhon.com}.}
     \item{balance}{This logical flag controls if load balancing is done
     across the cluster.  Load balancing can result in better cluster
     utilization; however, increased communication can reduce
@@ -369,16 +369,16 @@ GenMatch(Tr, X, BalanceMatrix=X, estimand="ATT", M=1, weights=NULL,
   Matching for Estimating Causal Effects: A General Multivariate
   Matching Method for Achieving Balance in Observational Studies.''
   \emph{Review of Economics and Statistics}.  95 (3): 932--945.
-  \url{http://sekhon.berkeley.edu/papers/GenMatch.pdf}
+  \url{https://www.jsekhon.com}
 
   Sekhon, Jasjeet Singh and Walter R. Mebane, Jr. 1998.  "Genetic
   Optimization Using Derivatives: Theory and Application to Nonlinear
   Models.'' \emph{Political Analysis}, 7: 187-210.
-  \url{http://sekhon.berkeley.edu/genoud/genoud.pdf} 
+  \url{https://www.jsekhon.com} 
 }
 \author{
   Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.  
+  \url{https://www.jsekhon.com}.  
 }
 \seealso{ Also see \code{\link{Match}}, \code{\link{summary.Match}},
   \code{\link{MatchBalance}}, \code{\link[rgenoud]{genoud}},
@@ -402,7 +402,7 @@ BalanceMat <- cbind(age, educ, black, hisp, married, nodegr, u74, u75, re75, re7
 #'BalanceMat'. This is only an example so we want GenMatch to be quick
 #so the population size has been set to be only 16 via the 'pop.size'
 #option. This is *WAY* too small for actual problems.
-#For details see http://sekhon.berkeley.edu/papers/MatchingJSS.pdf.
+#For details see https://www.jsekhon.com.
 #
 genout <- GenMatch(Tr=treat, X=X, BalanceMatrix=BalanceMat, estimand="ATE", M=1,
                    pop.size=16, max.generations=10, wait.generations=1)
@@ -424,7 +424,7 @@ mb <- MatchBalance(treat~age +educ+black+ hisp+ married+ nodegr+ u74+ u75+
                    re75+ re74+ I(re74*re75),
                    match.out=mout, nboots=500)
 
-# For more examples see: http://sekhon.berkeley.edu/matching/R.
+# For more examples see: https://www.jsekhon.com.
 }
 \keyword{nonparametric}
 

man/Match.Rd

@@ -305,7 +305,7 @@ Match(Y=NULL, Tr, X, Z = X, V = rep(1, length(Y)), estimand = "ATT", M = 1,
   Matching for Estimating Causal Effects: A General Multivariate
   Matching Method for Achieving Balance in Observational Studies.''
   \emph{Review of Economics and Statistics}. 95 (3): 932--945.
-  \url{http://sekhon.berkeley.edu/papers/GenMatch.pdf}
+  \url{https://www.jsekhon.com}
 
   Abadie, Alberto and Guido Imbens. 2006.
   ``Large Sample Properties of Matching Estimators for Average
@@ -316,7 +316,7 @@ Match(Y=NULL, Tr, X, Z = X, V = rep(1, length(Y)), estimand = "ATT", M = 1,
 
 }
 \author{Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.
+  \url{https://www.jsekhon.com}.
 }
 \seealso{ Also see \code{\link{summary.Match}},
   \code{\link{GenMatch}},

man/MatchBalance.Rd

@@ -126,7 +126,7 @@ MatchBalance(formul, data = NULL, match.out = NULL, ks = TRUE,
   Matching for Estimating Causal Effects: A General Multivariate
   Matching Method for Achieving Balance in Observational Studies.''
   \emph{Review of Economics and Statistics}.  95 (3): 932--945.
-  \url{http://sekhon.berkeley.edu/papers/GenMatch.pdf}
+  \url{https://www.jsekhon.com}
 
   Abadie, Alberto.  2002.  ``Bootstrap Tests for Distributional Treatment
   Effects in Instrumental Variable Models.'' \emph{Journal of the
@@ -147,7 +147,7 @@ MatchBalance(formul, data = NULL, match.out = NULL, ks = TRUE,
 }
 \author{
   Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.
+  \url{https://www.jsekhon.com}.
 }
 \seealso{
   Also see \code{\link{Match}}, \code{\link{GenMatch}},

man/Matchby.Rd

@@ -209,7 +209,7 @@ Matchby(Y, Tr, X, by, estimand = "ATT", M = 1, ties=FALSE, replace=TRUE,
   Matching for Estimating Causal Effects: A General Multivariate
   Matching Method for Achieving Balance in Observational Studies.''
   \emph{Review of Economics and Statistics}.  95 (3): 932--945.
-  \url{http://sekhon.berkeley.edu/papers/GenMatch.pdf}
+  \url{https://www.jsekhon.com}
 
   Abadie, Alberto and Guido Imbens. 2006.
   ``Large Sample Properties of Matching Estimators for Average
@@ -220,7 +220,7 @@ Matchby(Y, Tr, X, by, estimand = "ATT", M = 1, ties=FALSE, replace=TRUE,
 
 }
 \author{Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.
+  \url{https://www.jsekhon.com}.
 }
 \seealso{ Also see \code{\link{Match}},
     \code{\link{summary.Matchby}},

man/balanceUV.Rd

@@ -76,7 +76,7 @@ balanceUV(Tr, Co, weights = rep(1, length(Co)), exact = FALSE, ks=FALSE,
 }
 \author{
   Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.
+  \url{https://www.jsekhon.com}.
 }
 \references{
   Sekhon, Jasjeet S. 2011.  "Multivariate and Propensity Score
@@ -88,7 +88,7 @@ balanceUV(Tr, Co, weights = rep(1, length(Co)), exact = FALSE, ks=FALSE,
   Matching for Estimating Causal Effects: A General Multivariate
   Matching Method for Achieving Balance in Observational Studies.''
   \emph{Review of Economics and Statistics}.  95 (3): 932--945.
-  \url{http://sekhon.berkeley.edu/papers/GenMatch.pdf}
+  \url{https://www.jsekhon.com}
 
   Rosenbaum, Paul R. and Donald B. Rubin. 1985. ``Constructing a Control
   Group Using Multivariate Matched Sampling Methods That Incorporate the

man/ks.boot.Rd

@@ -33,7 +33,7 @@ ks.boot(Tr, Co, nboots=1000, alternative = c("two.sided","less","greater"),
 }
 \author{
   Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.
+  \url{https://www.jsekhon.com}.
 }
 \references{
   Sekhon, Jasjeet S. 2011.  "Multivariate and Propensity Score
@@ -45,7 +45,7 @@ ks.boot(Tr, Co, nboots=1000, alternative = c("two.sided","less","greater"),
   Estimating Causal Effects: A General Multivariate Matching Method for
   Achieving Balance in Observational Studies.'' \emph{Review of
   Economics and Statistics}.  95 (3): 932--945.
-  \url{http://sekhon.berkeley.edu/papers/GenMatch.pdf}
+  \url{https://www.jsekhon.com}
 
   Abadie, Alberto.  2002.  ``Bootstrap Tests for Distributional Treatment
   Effects in Instrumental Variable Models.'' \emph{Journal of the

man/qqstats.Rd

@@ -37,7 +37,7 @@ qqstats(x, y, standardize=TRUE, summary.func)
 }
 \author{
   Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.
+  \url{https://www.jsekhon.com}.
 }
 \references{
   Sekhon, Jasjeet S. 2011.  "Multivariate and Propensity Score
@@ -48,7 +48,7 @@ qqstats(x, y, standardize=TRUE, summary.func)
   Diamond, Alexis and Jasjeet S. Sekhon. Forthcoming. "Genetic Matching for
   Estimating Causal Effects: A General Multivariate Matching Method for
   Achieving Balance in Observational Studies.'' \emph{Review of Economics and Statistics}.
-  \url{http://sekhon.berkeley.edu/papers/GenMatch.pdf}
+  \url{https://www.jsekhon.com}
   }
   \seealso{ Also see \code{\link{ks.boot}},
     \code{\link{balanceUV}}, \code{\link{Match}},

man/summary.Match.Rd

@@ -19,7 +19,7 @@
 }
 \author{
   Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.  
+  \url{https://www.jsekhon.com}.  
 }
 \seealso{ Also see \code{\link{Match}}, \code{\link{GenMatch}},
   \code{\link{MatchBalance}}, 

man/summary.Matchby.Rd

@@ -17,7 +17,7 @@
 }
 \author{
   Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.  
+  \url{https://www.jsekhon.com}.  
 }
 \seealso{ Also see \code{\link{Matchby}},  \code{\link{Match}}, \code{\link{GenMatch}},
   \code{\link{MatchBalance}}, 

man/summary.balanceUV.Rd

@@ -16,7 +16,7 @@
 }
 \author{
   Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.  
+  \url{https://www.jsekhon.com}.  
 }
 \seealso{
   Also see \code{\link{balanceUV}}, 

man/summary.ks.boot.Rd

@@ -17,7 +17,7 @@
 }
 \author{
   Jasjeet S. Sekhon, UC Berkeley, \email{sekhon@berkeley.edu},
-  \url{http://sekhon.berkeley.edu/}.  
+  \url{https://www.jsekhon.com}.  
 }
 \seealso{
   Also see \code{\link{ks.boot}}, \code{\link{balanceUV}}, \code{\link{qqstats}},

src/cblas_dasum.c

@@ -25,13 +25,14 @@
 
    Jas Sekhon
    <sekhon@berkeley.edu>
-   http://sekhon.berkeley.edu
+   https://www.jsekhon.com
    August 1, 2007
 */
 
 
 #include <R.h>
-#include <R_ext/Applic.h> /* R blas declarations */
+#include <R_ext/Applic.h> /* No longer contains R blas declarations */
+#include <R_ext/BLAS.h> /* New R blas declarations */
 
 //#include "cblas.h"
 double cblas_dasum( const int N, const double *X, const int incX) 

src/matching.cc

@@ -2283,8 +2283,7 @@ extern "C"
   {
     SEXP ret;
 
-    long N, xvars, M, caliper, restrict_trigger, restrict_nrow, DiagWeightMatrixFlag,
-      sum_caliper_drops=0;
+    long N, xvars, M, caliper, restrict_trigger, restrict_nrow, DiagWeightMatrixFlag;
     double cdd, diff, Distmax, dfoo;
 
     long i, j, k;
@@ -2605,7 +2604,6 @@ extern "C"
 	      {
 		if ( (Distmax+cdd) > DBL_MAX_CHECK)
 		  {
-		    sum_caliper_drops++;
 		    continue;
 		  }
 	      } 
@@ -2673,7 +2671,6 @@ extern "C"
 	    {
 	      if ( (Distmax+cdd) > DBL_MAX_CHECK)
 		{
-		  sum_caliper_drops++;
 		  continue;
 		}
 	    } 

src/scythematrix.cc

@@ -1,5 +1,5 @@
 /* Edited by Jasjeet S. Sekhon <jasjeet_sekhon@berkeley.edu> */
-/* HTTP://sekhon.berkeley.edu                                */
+/* https://www.jsekhon.com                            */
 /*                                                           */
 /* April 26, 2013                                            */
 /* get rid of friend-injection for ones, zero, seqa          */