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variantconvert

Usage instructions:

  1. create an appropriate python env with python>=3.8 ; panda and pyfaidx ; or use the python from the dockerfile
  2. git clone the project
  3. cd variantconvert
  4. pip install -e .
  5. change the genome path in config files

For more info: variantconvert --help

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  • Python 97.5%
  • Dockerfile 2.5%