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Phillips et al 2023

This repository contains R code for the analysis of next generation sequencing data included in Phillips et al 2023, bioRxiv. Any questions should be directed to jjday@uab.edu and rphill3@uab.edu.

Citations

Robert A. Phillips III, Ethan Wan, Jennifer J. Tuscher, Lara Ianov, Jeremy J. Day. (2023). Temporally Specific Gene Expression and Chromatin Remodeling Programs Regulate a Conserved Pdyn Enhancer. bioRxiv Link

Raw Data

  1. Bulk RNA-seq primary rat striatal neurons 1 h vehicle or KCl: GSE150499
  2. Bulk RNA-seq primary rat striatal neurons 4 h vehicle or KCl: GSE233752
  3. Bulk ATAC-seq primary rat striatal neurons 1 h vehicle or KCl: GSE150589
  4. Bulk ATAC-seq primary rat striatal neurons 4 h vehicle or KCl: GSE233368
  5. Bulk ATAC-seq primary rat striatal neurons 4 h vehicle or KCl with anisomycin: GSE233368
  6. snATAC-seq adult rat nucleus accumbens: GSE233754