This repository contains R code for the analysis of next generation sequencing data included in Phillips et al 2023, bioRxiv. Any questions should be directed to jjday@uab.edu and rphill3@uab.edu.
Robert A. Phillips III, Ethan Wan, Jennifer J. Tuscher, Lara Ianov, Jeremy J. Day. (2023). Temporally Specific Gene Expression and Chromatin Remodeling Programs Regulate a Conserved Pdyn Enhancer. bioRxiv Link
- Bulk RNA-seq primary rat striatal neurons 1 h vehicle or KCl: GSE150499
- Bulk RNA-seq primary rat striatal neurons 4 h vehicle or KCl: GSE233752
- Bulk ATAC-seq primary rat striatal neurons 1 h vehicle or KCl: GSE150589
- Bulk ATAC-seq primary rat striatal neurons 4 h vehicle or KCl: GSE233368
- Bulk ATAC-seq primary rat striatal neurons 4 h vehicle or KCl with anisomycin: GSE233368
- snATAC-seq adult rat nucleus accumbens: GSE233754