A simple GUI application to process hyperspectral tiff images generated by CARS microscopes.
Certainly will need some updates and proper citations.
Usage:
-
python3 HSA.py
-
Opens tiff, csv, excel files.
- CSV/EXCEL files should have X or Raman as header containing the x-axis, Y containing the intensities.
Requirements:
- 64 bit python (better data handling > 2GB)
- tifffile
- pandas
- numpy
- scipy
Uses:
- CRIKIT by Charles H. Camp Jr to perform Raman retrieval algorithm
https://github.com/CoherentRamanNIST/CRIkit
- tifffile by Christoph Gohlke
https://github.com/blink1073/tifffile
- pyqtgraph by Luke Campagnola