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Prepare for maven central
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@JervenBolleman
JervenBolleman committed Oct 27, 2023
1 parent f981521 commit 38d43f5
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20 changes: 20 additions & 0 deletions LICENSE.md
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The MIT License (MIT)

Copyright (c) 2020 SIB Swiss Institute of Bioinformatics

Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limitation the rights to
use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
the Software, and to permit persons to whom the Software is furnished to do so,
subject to the following conditions:

The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
145 changes: 98 additions & 47 deletions pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>swiss.sib.swissprot</groupId>
<groupId>io.github.jervenbolleman</groupId>
<artifactId>handlegraph4j-rdf</artifactId>
<version>1.0-SNAPSHOT</version>
<version>0.1</version>
<packaging>jar</packaging>
<licenses>
<license>
<name>The MIT License (MIT)</name>
<url>https://github.com/JervenBolleman/handlegraph4jRDF/blob/main/LICENSE.md</url>
<distribution>repo</distribution>
</license>
</licenses>
<developers>
<developer>
<id>jerven</id>
<name>Jerven Bolleman</name>
<email>jerven.bolleman@sib.swiss</email>
<organization>SIB Swiss Institute of Bioinformatics</organization>
<organizationUrl>https://www.sib.swiss</organizationUrl>
<roles>
<role>developer</role>
</roles>
</developer>
</developers>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<graalvm.version>20.2.0</graalvm.version>
<eclipse.rdf4j.version>4.0.0-M2</eclipse.rdf4j.version>
<eclipse.rdf4j.version>4.3.7</eclipse.rdf4j.version>
</properties>

<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<version>3.11.0</version>
<configuration>
<release>17</release>
<showDeprecation>true</showDeprecation>
<annotationProcessorPaths>
<path>
<groupId>info.picocli</groupId>
<artifactId>picocli-codegen</artifactId>
<version>4.5.2</version>
<version>4.7.5</version>
</path>
</annotationProcessorPaths>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.22.0</version>
<version>3.1.2</version>
<configuration>
<trimStackTrace>false</trimStackTrace>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<version>3.6.0</version>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
Expand All @@ -51,18 +70,73 @@
</archive>
</configuration>
</plugin>
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.13</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://oss.sonatype.org/</nexusUrl>
<autoReleaseAfterClose>false</autoReleaseAfterClose>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.3.0</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.6.0</version>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>3.1.0</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
<configuration>
<keyname>${gpg.keyname}</keyname>
<passphraseServerId>${gpg.keyname}</passphraseServerId>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>info.picocli</groupId>
<artifactId>picocli</artifactId>
<version>4.5.2</version>
<version>4.7.5</version>
</dependency>
<dependency>
<groupId>io.github.vgteam</groupId>
<artifactId>handlegraph4j-gfa</artifactId>
<version>1.0-SNAPSHOT</version>
<groupId>io.github.jervenbolleman</groupId>
<artifactId>handlegraph4j-gfa</artifactId>
<version>1.2</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.eclipse.rdf4j/rdf4j-rio -->
<dependency>
Expand All @@ -74,60 +148,37 @@
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter-api</artifactId>
<version>5.6.0</version>
<version>5.10.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter-params</artifactId>
<version>5.6.0</version>
<version>5.10.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter-engine</artifactId>
<version>5.6.0</version>
<version>5.10.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.collections</groupId>
<artifactId>eclipse-collections-api</artifactId>
<version>10.4.0</version>
<version>11.1.0</version>
</dependency>
<dependency>
<groupId>org.eclipse.collections</groupId>
<artifactId>eclipse-collections</artifactId>
<version>10.4.0</version>
</dependency>
<dependency>
<groupId>org.graalvm.sdk</groupId>
<artifactId>graal-sdk</artifactId>
<version>${graalvm.version}</version>
<scope>provided</scope>
<version>11.1.0</version>
</dependency>
</dependencies>

<distributionManagement>
<repository>
<id>github</id>
<name>GitHub Jerven Bolleman Apache Maven Packages</name>
<url>https://maven.pkg.github.com/JervenBolleman/handlegraph4jRDF</url>
</repository>
</distributionManagement>

<repositories>
<repository>
<id>central</id>
<url>https://repo1.maven.org/maven2</url>
<releases><enabled>true</enabled></releases>
<snapshots><enabled>true</enabled></snapshots>
</repository>
<repository>
<id>github</id>
<name>GitHub Jerven Bolleman handlegraph4j Apache Maven Packages</name>
<url>https://maven.pkg.github.com/jervenbolleman/handlegraph4jGFA</url>
<releases><enabled>true</enabled></releases>
<snapshots><enabled>true</enabled></snapshots>
</repository>
</repositories>
<name>handlegraph4jRDF</name>
<url>https://github.com/jervenbolleman/handlegraph4jRDF</url>
<description>A set of java classes to describe a VG variation graph in RDF plus GFA1 to RDF convertor.</description>
<scm>
<url>https://github.com/jervenbolleman/handlegraph4jRDF</url>
<developerConnection>Jerven Bolleman</developerConnection>
</scm>
</project>
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