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error for runFastPCA #14

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f-kvh opened this issue Mar 2, 2023 · 1 comment
Open

error for runFastPCA #14

f-kvh opened this issue Mar 2, 2023 · 1 comment

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@f-kvh
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f-kvh commented Mar 2, 2023

Hi, when I select the "fixedNum" = 40000 cells as below
fcs.data <- runExprsMerge(fcs.files, comp = FALSE, transformMethod = "none", mergeMethod = "fixed", fixedNum = 40000)

I get error message in cyt <- runFastPCA(cyt)
Error in La.svd(x, nu = 0) : infinite or missing values in 'x'
I looked at cyt@raw.data & cyt@log.data there are no missing values/NA.
Can you help to solve it?
@f-kvh
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f-kvh commented Mar 2, 2023

I should add when I reduce the numbers as default (ceil = 2000) then it works

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