SegWorm - Matlab Classes

SegWorm is Matlab code from Dr. Eviatar Yemini built as part of the WormBehavior database

This version of the code is an attempt to rewrite/clean up the code by using classes and packages to better encapsulate functionality.

As of Sep 2014, the idea is for this repo to be completely ported over to movement_validation, in Python, soon.

Project Status

• video to normalized worm: unfinished, current work at seg_worm.parseWormFromVideo
• normalized worm to features: finished, see example of usage in seg_worm.testing.features.t_001__mrcCodeVsNewCode
• features to stats: finished - see example usage in seg_worm.testing.stats.t001_oldVsNewStats

Test files

Files for features, somewhere in the Google Drive folder example_data. @JimHokanson & @MichaelCurrie need to clean up this folder ... (i.e. issue 80 of the movement_validation repo)

Files for stats are all on the MRC ftp, see @slarson's discussion of the how to connect to the FTP

Setting up code

1. Get the files and change any constants (these should be obvious in the files)
2. Add the repository folder to the Matlab path
3. If comparing to old code, add the folders oldFeatures and oldStats to the path