what options should we use with jackhmmer?

[rainwala]

Hello, thank you for your paper and code. I'm trying to use your model to predict the structure of a single sequence. I have installed jackhmmer and run it on the proteinnet12 database, but it does not produce any output files. From your convert_to_proteinnet.py script, it seems that I need a file with the same stem as the input sequence, but with an extension ".icinfo", and one with an extension ".cinfo" . What options should I use with jackhmmer to produce these files?

Thank you.