scMTD

A R package.

scMTD: a statistical multidimensional imputation method for single-cell RNA-seq data leveraging transcriptome dynamic information

Installation

You can install scMTD from GitHub with:

install.packages("devtools")         
library(devtools)           
install_github("Jinsl-lab/scMTD")

Quick start

The input data of scMTD is a gene expression matrix, columns and rows represent cells and genes respectively.

library("scMTD")
data(data)
imputed_data<-scMTD(data,do.nor=TRUE,do.log=TRUE,cores=2)