Change input type of pca.fit_transform to ndarray

JohnMMa · Jul 25, 2023 · b4371fa · b4371fa
1 parent 14a18ef
commit b4371fa
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/kb_python/report/report_matrix.ipynb b/kb_python/report/report_matrix.ipynb
@@ -158,7 +158,7 @@
     "sc.pp.normalize_total(adata, target_sum=1e4)\n",
     "sc.pp.log1p(adata)\n",
     "pca = PCA(n_components=10)\n",
-    "pc = pca.fit_transform(adata.X.todense())"
+    "pc = pca.fit_transform(adata.X.toarray())"
    ]
   },
   {