Jonikas Lab
- Carnegie Institution for Science, Stanford, CA
- http://dpb.carnegiescience.edu/labs/jonikas-lab
- wpatena@carnegiescience.edu
Popular repositories Loading
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Li-Patena-2019
Li-Patena-2019 PublicCode used for the paper "A genome-wide algal mutant library and functional screen identifies genes required for eukaryotic photosynthesis" by Li, Patena et al.
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Li-Zhang-Patena-2015
Li-Zhang-Patena-2015 PublicCode used for the paper "An indexed, mapped mutant library enables reverse genetics studies of biological processes in Chlamydomonas reinhardtii" by Li, Zhang, Patena et al.
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tagging_primer_design
tagging_primer_design PublicCode and data used for generating primers for the paper "A spatial interactome reveals the anatomy of the algal CO2 concentrating mechanism" by Mackinder et al, Cell 2017
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Zhang-Patena-2014
Zhang-Patena-2014 PublicCode used for the paper "High-throughput genotyping of green algal mutants reveals random distribution of mutagenic insertion sites and endonucleolytic cleavage of transforming DNA" by Zhang, Paten…
Python 1
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deepseq-processing
deepseq-processing PublicPreprocessing and alignment of deep-sequencing files (mostly for Jonikas lab mutant pools).
Python
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basic-bioinf-utilities
basic-bioinf-utilities PublicBasic bioinformatics utilities by Weronika - useful standalone, and needed for many other packages.
Python 2
Repositories
- basic-bioinf-utilities Public
Basic bioinformatics utilities by Weronika - useful standalone, and needed for many other packages.
Jonikas-Lab/basic-bioinf-utilities’s past year of commit activity - mutant-pools Public
Mutant pool deepseq data generation/analysis/plotting/simulation/etc and related programs.
Jonikas-Lab/mutant-pools’s past year of commit activity - Li-Patena-2019 Public
Code used for the paper "A genome-wide algal mutant library and functional screen identifies genes required for eukaryotic photosynthesis" by Li, Patena et al.
Jonikas-Lab/Li-Patena-2019’s past year of commit activity - tagging_primer_design Public
Code and data used for generating primers for the paper "A spatial interactome reveals the anatomy of the algal CO2 concentrating mechanism" by Mackinder et al, Cell 2017
Jonikas-Lab/tagging_primer_design’s past year of commit activity - combinatorial-deconvolution Public
Jonikas-Lab/combinatorial-deconvolution’s past year of commit activity - deepseq-processing Public
Preprocessing and alignment of deep-sequencing files (mostly for Jonikas lab mutant pools).
Jonikas-Lab/deepseq-processing’s past year of commit activity - combinatorial-pooling Public
Jonikas-Lab/combinatorial-pooling’s past year of commit activity - Li-Zhang-Patena-2015 Public
Code used for the paper "An indexed, mapped mutant library enables reverse genetics studies of biological processes in Chlamydomonas reinhardtii" by Li, Zhang, Patena et al.
Jonikas-Lab/Li-Zhang-Patena-2015’s past year of commit activity - Zhang-Patena-2014 Public
Code used for the paper "High-throughput genotyping of green algal mutants reveals random distribution of mutagenic insertion sites and endonucleolytic cleavage of transforming DNA" by Zhang, Patena et al. (The Plant Cell, 2014).
Jonikas-Lab/Zhang-Patena-2014’s past year of commit activity
