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Sync #49

Merged
merged 245 commits into from Jan 24, 2022
Merged

Sync #49

merged 245 commits into from Jan 24, 2022

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JoranAngevaare
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ahiguera-mx and others added 30 commits August 4, 2021 16:34
* change plotting of dead pmts.

Co-authored-by: GiovanniVolta <gvolta@dali-login1.rcc.local>
Co-authored-by: Joran Angevaare <jorana@nikhef.nl>
* I added first nVeto monitor plugin

* Update straxen/plugins/online_monitor.py

I modified as suggestion from @jorana

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>

* Update straxen/plugins/online_monitor.py

I modified as suggestion

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>

* Update straxen/plugins/online_monitor.py

I modified as suggestion

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>

* Update straxen/plugins/online_monitor.py

I modified as suggestion

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>

* Update straxen/plugins/online_monitor.py

I modified as suggestion at line 235 in new version

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>

* Update online_monitor.py

Update online_monitor.py with the

* Add online_monitor_nv to contexts.py

Add 'online_monitor_nv' at line 196 to contexts.py 
to produce data to monitor nVeto detector

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>
* Numbafy binomial_test

* Small changes in neg2ll_modpoisson

* fix bug on binomial test

* update binomial test considering that the mean is not the maximum

Co-authored-by: GiovanniVolta <gvolta@dali-login1.rcc.local>
* Add peak and event veto tagging plugins + tests

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>
* Add a plugin for external trigger run on nVeto calibration plus tests

Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com>

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>
* Fixed floating point issue

* Renamed function update test

* bumped version

Co-authored-by: Evan Shockley <eshockley@physics.ucsd.edu>
* Modified peaklet building to remove baseline bias

* Forgot to updated desaturation

* test

* Fix record_i in overlapping peaks

* Updated peaklets building according to change in strax

* Minor fixes

* Addressed some review dog comments.

* Added test for new function

* Fixed test

* Add empty peaklets support

* Update splitting inputs in veto plugins

* Add time shift to get correct maximum

* Update peaklet_processing.py

* Rename startegy alias

* Update straxen/plugins/peaklet_processing.py

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>

* Change naming conventions

* fix test

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>
Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.5.0 to 2.5.1.
- [Release notes](https://github.com/tensorflow/tensorflow/releases)
- [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md)
- [Commits](tensorflow/tensorflow@v2.5.0...v2.5.1)

---
updated-dependencies:
- dependency-name: tensorflow
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Add lone hit information to merged S2s.

* Copy lone hit as it is read only

* Add dummy lone hits for he channel

* Modify tests to avoid deadlock

* Revert "Add dummy lone hits for he channel"

This reverts commit 4710419.

* Revert "Revert "Add dummy lone hits for he channel""

This reverts commit 4cbfb3c.

* Revert "Modify tests to avoid deadlock"

This reverts commit 271e7cf.

* Update straxen/plugins/peaklet_processing.py

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>
* use nested imports for RucioRemote

* use the right imports

* fix none/import error

* add simple test

* test loading runs

* if no utilix there is no sense in testing

* make faster

* test find

* Update test_rucio.py

* Update test_rucio.py

* comment on the tests

* Update test_rucio.py
* Update requirements for strax

* Update pytest.yml

* Update pytest.yml

* Update pytest.yml

* Update pytest.yml

* Update pytest.yml

* Update pytest.yml

* Update pytest.yml

* Update pytest.yml

* Create filter_strax_from_requirements.sh

* Update pytest.yml

* Update pytest.yml
* Fixed +1 in n_hits
Co-authored-by: Daniel Wenz <43881800+WenzDaniel@users.noreply.github.com>
dependabot bot and others added 29 commits January 10, 2022 08:39
Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 1.0.1 to 1.0.2.
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.0.1...1.0.2)

---
updated-dependencies:
- dependency-name: scikit-learn
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.31.6 to 6.34.1.
- [Release notes](https://github.com/HypothesisWorks/hypothesis/releases)
- [Commits](HypothesisWorks/hypothesis@hypothesis-python-6.31.6...hypothesis-python-6.34.1)

---
updated-dependencies:
- dependency-name: hypothesis
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [nbsphinx](https://github.com/spatialaudio/nbsphinx) from 0.8.7 to 0.8.8.
- [Release notes](https://github.com/spatialaudio/nbsphinx/releases)
- [Changelog](https://github.com/spatialaudio/nbsphinx/blob/master/NEWS.rst)
- [Commits](spatialaudio/nbsphinx@0.8.7...0.8.8)

---
updated-dependencies:
- dependency-name: nbsphinx
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump peaklets version

* Update peaklet_processing.py

Co-authored-by: Joran Angevaare <jorana@nikhef.nl>
* Update requirements.txt

* Update requirements.txt

* Update requirements.txt

* update test

* typo

* sort by alpha.

* fix end

* Update requirements-tests.txt
* just another hack for WFSim<3CMT

* alternative suggestion

* reveert

* revert please

* keep wfsim hack working as expected

Co-authored-by: Yossi Mosbacher <joe.mosbacher>
* test for wfsim contexts

* fix typo

* how are you even supposed to pass these arguments?!

* maybe this is the right syntax? Super convoluted..

* skip no db test

* fix some leftovers
* test with py3.10

* bump tf

* Update pytest.yml

* pin keras

* fix test for wfsim

* differently

* Update pytest.yml

* clean instructins

* remove scaffolding

* another try

* simplify pandas

* fix typo

* skip HV

* fix dtype
* Add additional tests

* Add additional tests

* Add additional tests

* Update scada.py

* add some more

Co-authored-by: Joran R. Angevaare <jorana@nikhef.nl>
* Update test_mongo_interactions.py

* i love codefactor?
* Delete update context collection

* Delete create-utilix-config.sh
* document urlconfigs

* comment on URL argument order

* change order

Co-authored-by: Yossi Mosbacher <joe.mosbacher>
Co-authored-by: Joran Angevaare <jorana@nikhef.nl>
@JoranAngevaare JoranAngevaare merged commit 0b7cbfd into JoranAngevaare:joran_master Jan 24, 2022
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