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R Session Aborted #14
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Hi, If I try and use quotes around the tree file name instead of pointing to the working directory I get an error that the file doesn't exist. If I try to use the working directory the R session crashes. Do you have any advice or can I provide any files to help troubleshoot this? Thanks! |
Hi @hofskatr, Sorry for responding so slowly on this. The homoplasyFinder/R/homoplasyFinder.R Lines 270 to 279 in faed16f
The issue you have is that this function only wants the path to the file and then it will read in a file with file name structured: Note the In your case to avoid the error you might run something like:
Sorry again for not replying sooner and let me know if the above makes sense and helps! Joe |
I think the
R Session Aborted
error is caused byhomoplasyFinder
hanging after an error has been introduced. See the image below, I introduced an error by sending the wrong file name, it sends error and the next time I tryrunHomoplasyFinderInJava()
I get theR Session Aborted
error.Maybe I could add an
rJava
close all function at the start ofrunHomoplasyFinderInJava()
?The text was updated successfully, but these errors were encountered: