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add galba
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Juke34 committed Mar 5, 2024
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Expand Up @@ -158,6 +158,7 @@ List of genome annotation tools
2021 | FINDER | FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-04120-9 | Pipeline | Protein + RNAseq alignement + Abinitio (BRAKER) | Eukaryote | | | .gtf |
2022 | Pharokka | Pharokka: a fast scalable bacteriophage annotation tool - https://doi.org/10.1093/bioinformatics/btac776 | Pipeline | prodigal is used for CDS | bacteriophage | | | gff, gbk ,etc. |
2023 | FLAG | FLAG: Find, Label, Annotate Genomes, a fully automated tool for genome gene structural and functional annotation of highly fragmented non-model species https://www.biorxiv.org/content/10.1101/2023.07.14.548907v1.full | Pipeline | Protein + RNAseq alignement + Abinitio | Eukaryote | | Nextflow pipeline very complete | |
2023 | Galba | Galba: genome annotation with miniprot and AUGUSTUS - https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-023-05449-z | pipeline | Ab-intio evidence driven | eukaryote | | use Augustus + miniprot | |
| year | Tool name | Publication | Type | Method | Organism | Nb citation (pubmed 2016) | Comments | Output Format |

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