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[REVIEW]: HydroPowerModels.jl: A Julia/JuMP Package forHydrothermal Economic Dispatch Optimization #35

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whedon opened this issue Jul 15, 2019 · 40 comments
Closed
42 tasks done

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@whedon
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whedon commented Jul 15, 2019

Submitting author: @andrewrosemberg (Andrew Rosemberg)
Repository: https://github.com/andrewrosemberg/HydroPowerModels.jl
Branch with paper.md (empty if default branch):
Version:
Editor: @vchuravy
Reviewers: @frapac, @Lukrosz
Archive:

Status

status

Status badge code:

HTML: <a href="https://submissions.juliacon.org/papers/ad43bcbd43a6f904e60db8838c177520"><img src="https://submissions.juliacon.org/papers/ad43bcbd43a6f904e60db8838c177520/status.svg"></a>
Markdown: [![status](https://submissions.juliacon.org/papers/ad43bcbd43a6f904e60db8838c177520/status.svg)](https://submissions.juliacon.org/papers/ad43bcbd43a6f904e60db8838c177520)

Reviewers and authors:

Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)

Reviewer instructions & questions

@frapac & @Lukrosz, please carry out your review in this issue by updating the checklist below. If you cannot edit the checklist please:

  1. Make sure you're logged in to your GitHub account
  2. Be sure to accept the invite at this URL: https://github.com/JuliaCon/proceedings-reviews/invitations

The reviewer guidelines are available here: https://proceedings.juliacon.org/guide/reviewers. Any questions/concerns please let @vchuravy know.

Please try and complete your review in the next two weeks

Review checklist for @frapac

Conflict of interest

Code of Conduct

General checks

  • Repository: Is the source code for this software available at the repository url?
  • License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
  • Authorship: Has the submitting author (@andrewrosemberg) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?

Functionality

  • Installation: Does installation proceed as outlined in the documentation?
  • Functionality: Have the functional claims of the software been confirmed?
  • Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
  • Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
  • Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
  • Automated tests: Are there automated tests or manual steps described so that the function of the software can be verified?
  • Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Paper format

  • Authors: Does the paper.tex file include a list of authors with their affiliations?
  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • References: Do all archival references that should have a DOI list one (e.g., papers, datasets, software)?
  • Page limit: Is the page limit for full papers respected by the submitted document?

Content

  • Context: is the scientific context motivating the work correctly presented?
  • Methodology: is the approach taken in the work justified, presented with enough details and reference to reproduce it?
  • Results: are the results presented and compared to approaches with similar goals?

Review checklist for @Lukrosz

Conflict of interest

Code of Conduct

General checks

  • Repository: Is the source code for this software available at the repository url?
  • License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
  • Authorship: Has the submitting author (@andrewrosemberg) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?

Functionality

  • Installation: Does installation proceed as outlined in the documentation?
  • Functionality: Have the functional claims of the software been confirmed?
  • Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
  • Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
  • Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
  • Automated tests: Are there automated tests or manual steps described so that the function of the software can be verified?
  • Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Paper format

  • Authors: Does the paper.tex file include a list of authors with their affiliations?
  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • References: Do all archival references that should have a DOI list one (e.g., papers, datasets, software)?
  • Page limit: Is the page limit for full papers respected by the submitted document?

Content

  • Context: is the scientific context motivating the work correctly presented?
  • Methodology: is the approach taken in the work justified, presented with enough details and reference to reproduce it?
  • Results: are the results presented and compared to approaches with similar goals?
@whedon
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whedon commented Jul 15, 2019

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks. @frapac, @Lukrosz it looks like you're currently assigned to review this paper 🎉.

⭐ Important ⭐

If you haven't already, you should seriously consider unsubscribing from GitHub notifications for this (https://github.com/JuliaCon/proceedings-review) repository. As a reviewer, you're probably currently watching this repository which means for GitHub's default behaviour you will receive notifications (emails) for all reviews 😿

To fix this do the following two things:

  1. Set yourself as 'Not watching' https://github.com/JuliaCon/proceedings-review:

watching

  1. You may also like to change your default settings for this watching repositories in your GitHub profile here: https://github.com/settings/notifications

notifications

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

@whedon
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whedon commented Jul 15, 2019

Attempting PDF compilation. Reticulating splines etc...

@whedon
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whedon commented Jul 15, 2019

@frapac
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frapac commented Jul 15, 2019

@andrewrosemberg Do you mind if I open a PR on HydroPowerModels.jl to comment out your article?

@andrewrosemberg
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@andrewrosemberg Do you mind if I open a PR on HydroPowerModels.jl to comment out your article?

I don't mind at all. Please feel free to open one!

@Lukrosz
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Lukrosz commented Jul 17, 2019

Hi @andrewrosemberg,

Here attached is a document with my reviews of your article (HydroPowerModels.jl_article.pdf). For now, they are mainly focused on the structure and grammatics of the article and details about the model. Later on, I will comment about the package.

Let me know when you have the chance to read the pdf.

@frapac
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frapac commented Jul 21, 2019

Hi @andrewrosemberg,
please find my final review of the paper. Let me know if you have any question about it!

@andrewrosemberg
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andrewrosemberg commented Jul 21, 2019

Hi @frapac and @Lukrosz,
Thank you for your reviews! I just pushed changes according to some of the comments of your first reviews.

I will continue working to resolve the remaining points of your comments. Please let me know it you have any questions or additional comments.

@andrewrosemberg
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Hi @frapac and @Lukrosz,

Once again, thank you for the thoughtful comments and reviews. I just pushed the modifications I was working on based on your first and final reviews.

The remaining enhancements of the package proposed in the issues and reviews (seminal use-case testing, project.toml enhancement, benchmarks for SDDP libraries, ...) will be the developed from now on!

About the remaining boxes to be checked, do you have additional questions about the implementation, the usage or other points?

I am at your disposal for anything you may need.

Best regards,
Andrew

@vchuravy
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@andrewrosemberg, @frapac and @Lukrosz would be good to wrap this up soon.

@andrewrosemberg
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Hi @frapac and @Lukrosz,

Thanks again for the thoughtful comments and reviews. Do you need any additional information for the remaining points?

Best,
Andrew

@frapac
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frapac commented Oct 4, 2019

Hi @andrewrosemberg . For my part, I think you have addressed all the points that I raised during the review. I am looking forward seeing a clear separation between the optimization pass and the simulation, but this may be a bit premature at the moment. In any case, I would be very interested seeing an open-source package that solves OPF in a multistage stochastic programming setting!

@andrewrosemberg
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andrewrosemberg commented Oct 4, 2019

Thanks @frapac ! Yes, a pure multistage OPF would be very good, I will look into it!
About the review, I believe all the boxes should be checked in order for it to be over. @vchuravy Please correct me if I am wrong.

@Lukrosz Lukrosz closed this as completed Oct 7, 2019
@Lukrosz Lukrosz reopened this Oct 7, 2019
@Lukrosz
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Lukrosz commented Oct 7, 2019

Hello, @andrewrosemberg. Sorry for my very late respones.
Of my part, I don't have any further comments. I checked all the boxes to continue. with the process.

@andrewrosemberg
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@frapac and @Lukrosz, thanks for all the work and time you dedicated to this! I hope the package will meet your expectations :)

@vchuravy, thanks for the help in the review process! Please let me know if any additional steps are required.

Best,
Andrew

@andrewrosemberg
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@vchuravy, sorry for the subsequent comment, but occurred to me a question:

During the review process I have changed the article. Do we need to recompile de PDF?

@andrewrosemberg
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@vchuravy, we have checked all the boxes, are there any further steps for the paper to be accepted?

@andrewrosemberg
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@whedon generate pdf

@whedon
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whedon commented Feb 22, 2020

@andrewrosemberg
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@vchuravy, I have published the code using zenodo, following the proceedings docs, and the DOI associated with the final version of the paper and package is: 10.5281/zenodo.3842130
The version is v0.1.0.
Doi is shown in the master.
Tag is this one.

@vchuravy
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@whedon set 10.5281/zenodo.3842130 as archive

@whedon
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whedon commented Jul 27, 2020

OK. 10.5281/zenodo.3842130 is the archive.

@vchuravy
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@whedon check references

@whedon
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whedon commented Jul 27, 2020

Reference check summary:

OK DOIs

- 10.1287/opre.38.5.911 is OK
- 10.1109/TPWRS.2017.2672204 is OK
- 10.23919/PSCC.2018.8442948 is OK
- 10.1137/15M1020575 is OK
- 10.5281/zenodo.2628748 is OK

MISSING DOIs

- https://doi.org/10.1137/141000671 may be missing for title: Julia: A fresh approach to numerical computing
- https://doi.org/10.1016/0142-0615(89)90025-2 may be missing for title: Optimal stochastic operations scheduling of large hydroelectric systems
- https://doi.org/10.1007/bf01582895 may be missing for title: Multi-stage stochastic optimization applied to energy planning
- https://doi.org/10.1287/opre.2013.1175 may be missing for title: On solving multistage stochastic programs with coherent risk measures
- https://doi.org/10.1561/9781680835410 may be missing for title: A survey of relaxations and approximations of the power flow equations
- https://doi.org/10.1023/a:1022641805263 may be missing for title: Convergent cutting-plane and partial-sampling algorithm for multistage stochastic linear programs with recourse
- https://doi.org/10.23919/pscc.2018.8442754 may be missing for title: Twenty Years of Application of Stochastic Dual Dynamic Programming in Official and Agent Studies in Brazil-Main Features and Improvements on the NEWAVE Model

INVALID DOIs

- None

@vchuravy
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@wheden set v0.1.0 as version

@vchuravy
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@whedon set v0.1.0 as version

@whedon
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whedon commented Jul 27, 2020

OK. v0.1.0 is the version.

@vchuravy
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@andrewrosemberg thank you for your patience can you add the missing DOIs?

@andrewrosemberg
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Yess will do that now! Will let you know when its done

@andrewrosemberg
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@whedon check references

@whedon
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whedon commented Jul 28, 2020

Reference check summary:

OK DOIs

- 10.1137/141000671 is OK
- 10.1287/opre.38.5.911 is OK
- 10.1016/0142-0615(89)90025-2 is OK
- 10.1007/bf01582895 is OK
- 10.1287/opre.2013.1175 is OK
- 10.1109/TPWRS.2017.2672204 is OK
- 10.23919/PSCC.2018.8442948 is OK
- 10.1137/15M1020575 is OK
- 10.5281/zenodo.2628748 is OK
- 10.1561/9781680835410 is OK
- 10.1023/a:1022641805263 is OK
- 10.23919/pscc.2018.8442754 is OK

MISSING DOIs

- None

INVALID DOIs

- None

@andrewrosemberg
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@vchuravy Missing DOIs added! sorry for the delay.
The updated version is already in the master, do I need to make a new release?

@vchuravy
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@whedon accept

@whedon
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whedon commented Jul 29, 2020

Attempting dry run of processing paper acceptance...

@whedon
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whedon commented Jul 29, 2020

👋 @JuliaCon/jcon-eics, this paper is ready to be accepted and published.

Check final proof 👉 JuliaCon/proceedings-papers#26

If the paper PDF and Crossref deposit XML look good in JuliaCon/proceedings-papers#26, then you can now move forward with accepting the submission by compiling again with the flag deposit=true e.g.

@whedon accept deposit=true

@whedon
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whedon commented Jul 29, 2020

Reference check summary:

OK DOIs

- 10.1137/141000671 is OK
- 10.1287/opre.38.5.911 is OK
- 10.1016/0142-0615(89)90025-2 is OK
- 10.1007/bf01582895 is OK
- 10.1287/opre.2013.1175 is OK
- 10.1109/TPWRS.2017.2672204 is OK
- 10.23919/PSCC.2018.8442948 is OK
- 10.1137/15M1020575 is OK
- 10.5281/zenodo.2628748 is OK
- 10.1561/9781680835410 is OK
- 10.1023/a:1022641805263 is OK
- 10.23919/pscc.2018.8442754 is OK

MISSING DOIs

- None

INVALID DOIs

- None

@vchuravy
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@whedon accept deposit=true

@whedon
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whedon commented Jul 29, 2020

Doing it live! Attempting automated processing of paper acceptance...

@whedon
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whedon commented Jul 29, 2020

🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JCON! 🚨🚨🚨

Here's what you must now do:

  1. Check final PDF and Crossref metadata that was deposited 👉 Creating pull request for 10.21105.jcon.00035 proceedings-papers#27
  2. Wait a couple of minutes to verify that the paper DOI resolves https://doi.org/10.21105/jcon.00035
  3. If everything looks good, then close this review issue.
  4. Party like you just published a paper! 🎉🌈🦄💃👻🤘

Any issues? Notify your editorial technical team...

@whedon
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whedon commented Jan 14, 2021

🎉🎉🎉 Congratulations on your paper acceptance! 🎉🎉🎉

If you would like to include a link to your paper from your README use the following code snippets:

Markdown:
[![DOI](https://proceedings.juliacon.org/papers/10.21105/jcon.00035/status.svg)](https://doi.org/10.21105/jcon.00035)

HTML:
<a style="border-width:0" href="https://doi.org/10.21105/jcon.00035">
  <img src="https://proceedings.juliacon.org/papers/10.21105/jcon.00035/status.svg" alt="DOI badge" >
</a>

reStructuredText:
.. image:: https://proceedings.juliacon.org/papers/10.21105/jcon.00035/status.svg
   :target: https://doi.org/10.21105/jcon.00035

This is how it will look in your documentation:

DOI

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