Merge branch 'master' into tgw/slfm_testADs

JuliaGaussianProcesses · Jul 13, 2021 · 706c6f1 · 706c6f1
2 parents c0deb6b + 2181649
commit 706c6f1
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diff --git a/.github/workflows/CompatHelper.yml b/.github/workflows/CompatHelper.yml
@@ -1,16 +1,35 @@
 name: CompatHelper
+
 on:
   schedule:
-    - cron: '00 00 * * *'
+    - cron: 0 0 * * *
   workflow_dispatch:
+
 jobs:
   CompatHelper:
     runs-on: ubuntu-latest
     steps:
-      - name: Pkg.add("CompatHelper")
-        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
-      - name: CompatHelper.main()
+      - uses: actions/checkout@v2
+      - name: "Install CompatHelper"
+        run: |
+          import Pkg
+          name = "CompatHelper"
+          uuid = "aa819f21-2bde-4658-8897-bab36330d9b7"
+          version = "2"
+          Pkg.add(; name, uuid, version)
+        shell: julia --color=yes {0}
+      - name: "Run CompatHelper"
+        run: |
+          import CompatHelper
+          subdirs = ["", "test", "docs"]
+          for f in readdir("examples"; join=true)
+              if isdir(f)
+                  push!(subdirs, joinpath("examples", basename(f)))
+              end
+          end
+          @info "CompatHelper directories" subdirs
+          CompatHelper.main(; subdirs=subdirs)
+        shell: julia --color=yes {0}
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
-        run: julia -e 'using CompatHelper; CompatHelper.main(; subdirs = ["", "docs", "test"])'
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -6,7 +6,7 @@ on:
   pull_request:
 jobs:
   test:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    name: Julia ${{ matrix.version }} - ${{ matrix.group }}
     runs-on: ${{ matrix.os }}
     continue-on-error: ${{ matrix.version == 'nightly' }}
     strategy:
@@ -18,10 +18,14 @@ jobs:
           - 'nightly'
         os:
           - ubuntu-latest
-          - macOS-latest
-          - windows-latest
         arch:
           - x64
+        group:
+          - 'Transform'
+          - 'BaseKernels'
+          - 'Kernels'
+          - 'MultiOutput'
+          - 'Others'
     steps:
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1
@@ -40,10 +44,26 @@ jobs:
             ${{ runner.os }}-
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
+        with:
+          coverage: ${{ matrix.version == '1' && matrix.os == 'ubuntu-latest' }}
+        env:
+          GROUP: ${{ matrix.group }}
       - uses: julia-actions/julia-processcoverage@v1
-      - name: Send coverage
         if: matrix.version == '1' && matrix.os == 'ubuntu-latest'
+      - name: Coveralls parallel
+        if: matrix.version == '1' && matrix.os == 'ubuntu-latest'
+        uses: coverallsapp/github-action@master
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          path-to-lcov: ./lcov.info
+          flag-name: run-${{ matrix.group }}
+          parallel: true
+  finish:
+    needs: test
+    runs-on: ubuntu-latest
+    steps:
+      - name: Send coverage
         uses: coverallsapp/github-action@master
         with:
-            github-token: ${{ secrets.GITHUB_TOKEN }}
-            path-to-lcov: ./lcov.info
+          github-token: ${{ secrets.github_token }}
+          parallel-finished: true
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
@@ -19,6 +19,8 @@ jobs:
         run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
       - name: Build and deploy
         env:
+          GKSwstype: nul # turn off GR's interactive plotting for notebooks
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token
           DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # For authentication with SSH deploy key
+          JULIA_DEBUG: Documenter # Print `@debug` statements (https://github.com/JuliaDocs/Documenter.jl/issues/955)
         run: julia --project=docs/ docs/make.jl
diff --git a/.gitignore b/.gitignore
@@ -1,6 +1,6 @@
 *.json
 *.cov
-Manifest.toml
+/Manifest.toml
+/test/Manifest.toml
 coverage/
-src/update_v0.8.0
 .DS_store
diff --git a/Project.toml b/Project.toml
@@ -1,6 +1,6 @@
 name = "KernelFunctions"
 uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392"
-version = "0.10.5"
+version = "0.10.7"
 
 [deps]
 ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"

diff --git a/docs/.gitignore b/docs/.gitignore
@@ -1,4 +1,3 @@
 build/
 site/
-
-#Temp to avoid to many changes
+src/examples/