Merge pull request #125 from JuliaGaussianProcesses/freeze-deps

Clean up and fix tests
JuliaGaussianProcesses · Jan 23, 2024 · 6023595 · 6023595 · simsurace · Jan 23, 2024
2 parents 2e6ccab + 064bb53
commit 6023595
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Showing 8 changed files with 16 additions and 20 deletions.
diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,7 @@
 name = "TemporalGPs"
 uuid = "e155a3c4-0841-43e1-8b83-a0e4f03cc18f"
 authors = ["willtebbutt <wt0881@my.bristol.ac.uk> and contributors"]
-version = "0.6.6"
+version = "0.6.7"
 
 [deps]
 AbstractGPs = "99985d1d-32ba-4be9-9821-2ec096f28918"
@@ -20,10 +20,10 @@ Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 AbstractGPs = "0.5.17"
 Bessels = "0.2.8"
 BlockDiagonals = "0.1.7"
-ChainRulesCore = "1"
-FillArrays = "0.13.0 - 0.13.7, 1"
+ChainRulesCore = "1.0.0 - 1.16.0"
+FillArrays = "0.13.0 - 0.13.7"
 KernelFunctions = "0.9, 0.10.1"
-StaticArrays = "1"
+StaticArrays = "1.0.0 - 1.6.5"
 StructArrays = "0.5, 0.6"
-Zygote = "0.6.65"
+Zygote = "0.6.65 - 0.6.65"
 julia = "1.6"
diff --git a/README.md b/README.md
@@ -15,6 +15,15 @@ TemporalGPs.jl is registered, so simply type the following at the REPL:
 ```
 While you can install TemporalGPs without AbstractGPs and KernelFunctions, in practice the latter are needed for all common tasks in TemporalGPs.
 
+## Note !!!
+
+This package is currently not guaranteed to work with all current versions of dependencies. If something is not working on the current release of TemporalGPs,
+please try out v0.6.7, which pins some dependencies in order to circumvent some of the problems. You can do so by typing instead:
+```julia
+] add AbstractGPs KernelFunctions TemporalGPs@0.6.7
+```
+Please report an issue if this work-around fails.
+
 # Example Usage
 
 Most examples can be found in the [examples](https://github.com/JuliaGaussianProcesses/TemporalGPs.jl/tree/master/examples) directory. In particular see the associated [README](https://github.com/JuliaGaussianProcesses/TemporalGPs.jl/tree/master/examples/README.md).

diff --git a/test/gp/lti_sde.jl b/test/gp/lti_sde.jl
@@ -3,8 +3,7 @@ using KernelFunctions: kappa
 using ChainRulesTestUtils
 using TemporalGPs: build_lgssm, StorageType, is_of_storage_type, lgssm_components
 using Test
-include("../test_util.jl")
-include("../models/model_test_utils.jl")
+
 _logistic(x) = 1 / (1 + exp(-x))
 
 # Everything is tested once the LGSSM is constructed, so it is sufficient just to ensure
@@ -226,7 +225,7 @@ println("lti_sde:")
 
             # Just need to ensure we can differentiate through construction properly.
             if isnothing(kernel.to_vec_grad)
-                @test_broken "Gradient tests are not passing"
+                @test_broken false # "Gradient tests are not passing"
                 continue
             elseif kernel.to_vec_grad
                 test_zygote_grad_finite_differences_compatible(

diff --git a/test/models/lgssm.jl b/test/models/lgssm.jl
@@ -25,9 +25,6 @@ using LinearAlgebra
 using StructArrays
 using Zygote, StaticArrays
 
-include("model_test_utils.jl")
-include("../test_util.jl")
-
 println("lgssm:")
 @testset "lgssm" begin
 

diff --git a/test/models/linear_gaussian_conditionals.jl b/test/models/linear_gaussian_conditionals.jl
@@ -1,9 +1,6 @@
 using TemporalGPs: posterior_and_lml, predict, predict_marginals
 using Test
 
-include("../test_util.jl")
-include("../models/model_test_utils.jl")
-
 println("linear_gaussian_conditionals:")
 @testset "linear_gaussian_conditionals" begin
     Dlats = [1, 3]

diff --git a/test/models/missings.jl b/test/models/missings.jl
@@ -7,9 +7,6 @@ using Random: randperm
 using ChainRulesTestUtils
 using Zygote: Context
 
-include("../test_util.jl")
-include("../models/model_test_utils.jl")
-
 @info "missings:"
 @testset "missings" begin
 

diff --git a/test/space_time/pseudo_point.jl b/test/space_time/pseudo_point.jl
@@ -16,8 +16,6 @@ using TemporalGPs:
     Separable,
     approx_posterior_marginals
 using Test
-include("../test_util.jl")
-include("../models/model_test_utils.jl")
 
 @testset "pseudo_point" begin
 

diff --git a/test/util/chainrules.jl b/test/util/chainrules.jl
@@ -9,7 +9,6 @@ using TemporalGPs: time_exp, _map, Gaussian
 using FillArrays
 using StructArrays
 using Zygote: ZygoteRuleConfig
-include("../test_util.jl")
 
 @testset "chainrules" begin
     @testset "StaticArrays" begin